Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004338`

染色体: Chr05 坐标: 57040110-57045175 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004338`
名称	SmilChr05G004338
描述	lysine histidine transporter 1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57040110 - 57045175 / `+`

ID 对照

NCBI Gene ID	`LOC131025388`
GeneID	`131025388`
locus_tag	`-`
NCBI Name	`LOC131025388`
原始查询	`SmilChr05G004338`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lysine histidine transporter 1-like
产物	lysine histidine transporter 1-like
Arabidopsis	`AT5G40780` (LHT1) lysine histidine transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:834078] identity=71.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os08g0127100` (OsHT) - identity=73.2; qcov=0.989; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF01490 (Aa_trans); PF03222 (Trp_Tyr_perm)
InterPro	-
eggNOG	-
NR	GeneID:131025388

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811106.1`
2	Nucleus	细胞核	0.00000	`XP_057811106.1`
3	Chromosome	染色体	0.00000	`XP_057811106.1`
4	Centromere	着丝粒	0.00000	`XP_057811106.1`
5	Chromatin	染色质	0.00000	`XP_057811106.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57040919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B104
`Chr5:57040937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr5:57040949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C9,D1
`Chr5:57040964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,B77
`Chr5:57040987`	`CCA`	`C`	2bp_deletion	frameshift_variant	234	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A23,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B109,B110,B112,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B131,B132,B134,B135,B137,B138,B139,B14,B140,B15,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B27,B28,B29,B3,B30,B31,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B73,B74,B75,B76,B77,B79,B8,B80,B82,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C62,C63,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C86,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr5:57040991`	`G`	`GTA`	2bp_insertion	stop_gained,frameshift_variant	233	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A23,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B109,B110,B112,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B131,B132,B134,B135,B137,B138,B139,B14,B140,B15,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B27,B28,B29,B3,B30,B31,B33,B34,B35,B37,B38,B39,B4,B40,B41,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B73,B74,B75,B76,B77,B79,B8,B80,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C56,C59,C6,C60,C61,C62,C63,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C86,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr5:57040997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr5:57041009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B69,C71,C73
`Chr5:57041030`	`C`	`CG`	1bp_insertion	frameshift_variant	20	A7,A9,B100,B102,B11,B128,B139,B16,B56,B57,B62,B67,B90,B96,C23,C37,C54,C62,C63,D1
`Chr5:57041033`	`CA`	`C`	1bp_deletion	frameshift_variant	10	B11,B139,B56,B67,B90,C37,C54,C62,C63,D1
`Chr5:57041987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr5:57041997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811106.1

443 aa

222

443

Aa_trans

Trp_Tyr_perm

PF01490 Aa_trans 32-427 aa PF03222 Trp_Tyr_perm 35-195 aa

XP_057811107.1

442 aa

221

442

Aa_trans

Trp_Tyr_perm

PF01490 Aa_trans 31-426 aa PF03222 Trp_Tyr_perm 34-194 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811106.1`	Pfam	`PF01490`	Aa_trans	Domain	32	427	2.1e-109	366.7	Transmembrane amino acid transporter protein
`XP_057811106.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	35	195	3.9e-10	40.1	Tryptophan/tyrosine permease family
`XP_057811107.1`	Pfam	`PF01490`	Aa_trans	Domain	31	426	2.1e-109	366.7	Transmembrane amino acid transporter protein
`XP_057811107.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	34	194	3.8e-10	40.1	Tryptophan/tyrosine permease family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955123.1
TATACACACACAATTTACTCTTCGAAGCCTAGCAATCTTCGAAATTTTATATCGAAGAGTTAACGAACAAACGGCTTATTATTGTTGCATGCGAGTAGGAAATATGGTGGCTCCAGGAGTCGAAAGAGAGATGACGGAGGAGGAGAAGATCGACGCGTGGCTTCCGATCACGTCTAGCCGGACGGCGAAGTGGTGGTACTCGACGTTCCACAACGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGCCTCCCCTACGCCA...

XM_057955124.1
ACACACAATTTACTCTTCGAAGCCTAGCAATCTTCGAAATTTTATATCGAAGAGTTAACGAACAAACGGCTTATTATTGTTGCATGCGAGGAAATATGGTGGCTCCAGGAGTCGAAAGAGAGATGACGGAGGAGGAGAAGATCGACGCGTGGCTTCCGATCACGTCTAGCCGGACGGCGAAGTGGTGGTACTCGACGTTCCACAACGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGCCTCCCCTACGCCATGTCCAAC...

CDS

2 records

下载 CDS FASTA

LOC131025388
ATGCGAGTAGGAAATATGGTGGCTCCAGGAGTCGAAAGAGAGATGACGGAGGAGGAGAAGATCGACGCGTGGCTTCCGATCACGTCTAGCCGGACGGCGAAGTGGTGGTACTCGACGTTCCACAACGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGCCTCCCCTACGCCATGTCCAACATGGGATGGGGACCGGGTAGCGTGATCATGGTGCTATCATGGTGCATCACTCTCTACACACTGTGGCAAATGGTGGAAAT...

LOC131025388
ATGCGAGGAAATATGGTGGCTCCAGGAGTCGAAAGAGAGATGACGGAGGAGGAGAAGATCGACGCGTGGCTTCCGATCACGTCTAGCCGGACGGCGAAGTGGTGGTACTCGACGTTCCACAACGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGCCTCCCCTACGCCATGTCCAACATGGGATGGGGACCGGGTAGCGTGATCATGGTGCTATCATGGTGCATCACTCTCTACACACTGTGGCAAATGGTGGAAATGCA...

Protein

2 records

下载 Protein FASTA

XP_057811106.1
MRVGNMVAPGVEREMTEEEKIDAWLPITSSRTAKWWYSTFHNVTAMVGAGVLSLPYAMSNMGWGPGSVIMVLSWCITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVLPQQIVVEVSTCIIYMVTGGKSLQKFHNTVCPSCKDIKLTYFILIFASVHFVLSHLPNFNSISAVSLAAAVMSLVYSTVAWTASIAKGAPANVGYGLRGKNPSENTFNFFNALGDIAFAFAGHNVVLEIQATIPSTPEKPSKKP...

XP_057811107.1
MRGNMVAPGVEREMTEEEKIDAWLPITSSRTAKWWYSTFHNVTAMVGAGVLSLPYAMSNMGWGPGSVIMVLSWCITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVLPQQIVVEVSTCIIYMVTGGKSLQKFHNTVCPSCKDIKLTYFILIFASVHFVLSHLPNFNSISAVSLAAAVMSLVYSTVAWTASIAKGAPANVGYGLRGKNPSENTFNFFNALGDIAFAFAGHNVVLEIQATIPSTPEKPSKKPM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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