Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004345`

染色体: Chr05 坐标: 57080259-57085667 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004345`
名称	SmilChr05G004345
描述	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57080259 - 57085667 / `-`

ID 对照

NCBI Gene ID	`LOC131025396`
GeneID	`131025396`
locus_tag	`-`
NCBI Name	`LOC131025396`
原始查询	`SmilChr05G004345`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
产物	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
Arabidopsis	`AT1G27900` (AT1G27900) RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839683] identity=75.5; qcov=0.994; evalue=0; confidence=high
Rice	`Os11g0310800` - identity=72.5; qcov=0.986; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure); GO:0016887 (ATP hydrolysis activity)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF13245 (AAA_19); PF13401 (AAA_22); PF21010 (HA2_C)
InterPro	-
eggNOG	-
NR	GeneID:131025396

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057811120.1`
2	Cytoplasm	细胞质	0.80000	`XP_057811120.1`
3	Chromosome	染色体	0.00000	`XP_057811120.1`
4	Centromere	着丝粒	0.00000	`XP_057811120.1`
5	Chromatin	染色质	0.00000	`XP_057811120.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57080774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr5:57081080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr5:57081740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B132,C56
`Chr5:57082188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,C71
`Chr5:57082204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C21
`Chr5:57083687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,C24,C46
`Chr5:57084215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B68
`Chr5:57084470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B16,B48,B77,D4
`Chr5:57084558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B132,C56
`Chr5:57084777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr5:57084826`	`G`	`GA`	1bp_insertion	frameshift_variant	9	A4,A6,B121,B134,B37,B57,B66,B78,B79
`Chr5:57084836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,B76,C53,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811120.1

709 aa

354

709

AAA_19

DEAD

AAA_22

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

PF13245 AAA_19 17-135 aa PF00270 DEAD 17-172 aa PF13401 AAA_22 26-141 aa PF00271 Helicase_C 209-340 aa PF04408 WHD_HA2 405-433 aa PF21010 HA2_C 434-495 aa PF07717 OB_NTP_bind 563-639 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811120.1`	Pfam	`PF13245`	AAA_19	Domain	17	135	1.1e-05	26.4	AAA domain
`XP_057811120.1`	Pfam	`PF00270`	DEAD	Domain	17	172	3.9e-08	33.9	DEAD/DEAH box helicase
`XP_057811120.1`	Pfam	`PF13401`	AAA_22	Domain	26	141	2.4e-07	31.9	AAA domain
`XP_057811120.1`	Pfam	`PF00271`	Helicase_C	Domain	209	340	9.6e-12	45.8	Helicase conserved C-terminal domain
`XP_057811120.1`	Pfam	`PF04408`	WHD_HA2	Domain	405	433	9.7e-11	42.2	Helicase associated domain (HA2), winged-helix
`XP_057811120.1`	Pfam	`PF21010`	HA2_C	Domain	434	495	1.4e-08	35.8	Helicase associated domain (HA2), ratchet-like
`XP_057811120.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	563	639	5.7e-21	75.2	Oligonucleotide/oligosaccharide-binding (OB)-fold

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955137.1
AAGAAAATTAAAATTATCGTTTTAACTGAAAAAGGGCGCACAAGCTGCTGTTGTGTCCTAAATAAGCTCAAAAAAGGTTTTGAGTTTGAGATTGGTAAACGCGGCAAAATTATACAAAACCCTAGTTAAACCTGTTGAATTTGAAATGTCAATTATTTCAATGGCAGAACTGCCAATTCTCCAATTTGAAGACAAAATCGTCGAAACCGTGGATAAGAATCCGGTAGTAGTTGTAATCGGTGAAACTGGCTCGGGAAAGA...

CDS

1 records

下载 CDS FASTA

LOC131025396
ATGTCAATTATTTCAATGGCAGAACTGCCAATTCTCCAATTTGAAGACAAAATCGTCGAAACCGTGGATAAGAATCCGGTAGTAGTTGTAATCGGTGAAACTGGCTCGGGAAAGAGTACGCAGCTCTCTCAAATTCTTCATCGACGAGGTTACACCAAATCGGGTTGCATCGCTGTAACTCAGCCGCGTCGAGTTGCCGCTGTTACAGTATCAAGGCGTGTCTCAGAAGAATTGAATGTGAGGCTCGGCGACGAGGTAGG...

Protein

1 records

下载 Protein FASTA

XP_057811120.1
MSIISMAELPILQFEDKIVETVDKNPVVVVIGETGSGKSTQLSQILHRRGYTKSGCIAVTQPRRVAAVTVSRRVSEELNVRLGDEVGYAIRFEDRTSEKTIIKYLTDGVLLRESLSNPELSQYSVIILDEAHERSLNTDVLLGLMKRLIKLRASNLKVLVTSATLDGEKVSRFFSNCPILNVPGKLFPVEIHHSSERPKSYIDASLKKALDIHTQEPEGDILIFMTGQDDIEKLVSRLEERIQRLEEGSCMDAVIYPLHG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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