当前解析结果
SmilChr05G004346| 统一新 Gene ID | SmilChr05G004346 |
|---|---|
| 名称 | SmilChr05G004346 |
| 描述 | uncharacterized SmilChr05G004346 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 57090398 - 57092113 / + |
| NCBI Gene ID | LOC131026177 |
|---|---|
| GeneID | 131026177 |
| locus_tag | - |
| NCBI Name | LOC131026177 |
| 原始查询 | SmilChr05G004346 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=31.8; qcov=0.231; evalue=1.13e-16; confidence=weak |
| Rice | Os08g0202300- identity=28.3; qcov=0.327; evalue=3.24e-23; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026177 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811931.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057811931.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811931.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811931.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811931.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:57090427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr5:57090497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,A5,A7 |
Chr5:57090502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,A5,A7 |
Chr5:57090503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C25 |
Chr5:57090551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B90,B91,C83 |
Chr5:57090589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:57090605 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B126,B38,B50,B62,B85,C38 |
Chr5:57090606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr5:57090664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr5:57090820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B85 |
Chr5:57090856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr5:57090907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,C12,C26,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811931.1PF17919
RT_RNaseH_2 95-192 aa
PF17917
RT_RNaseH 121-224 aa
PF00075
RNase_H 274-395 aa
PF13456
RVT_3 276-395 aa
PF17921
Integrase_H2C2 495-548 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811931.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 95 | 192 | 7e-24 | 84.5 | RNase H-like domain found in reverse transcriptase |
XP_057811931.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 121 | 224 | 6.6e-24 | 84.8 | RNase H-like domain found in reverse transcriptase |
XP_057811931.1 |
Pfam | PF00075 |
RNase_H | Domain | 274 | 395 | 7.4e-09 | 36.6 | RNase H |
XP_057811931.1 |
Pfam | PF13456 |
RVT_3 | Domain | 276 | 395 | 6.3e-21 | 75.3 | Reverse transcriptase-like |
XP_057811931.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 495 | 548 | 7.8e-10 | 39.5 | Integrase zinc binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。