Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004356`

染色体: Chr05 坐标: 57146440-57149704 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004356`
名称	SmilChr05G004356
描述	receptor protein kinase-like protein ZAR1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57146440 - 57149704 / `+`

ID 对照

NCBI Gene ID	`LOC131025407`
GeneID	`131025407`
locus_tag	`-`
NCBI Name	`LOC131025407`
原始查询	`SmilChr05G004356`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor protein kinase-like protein ZAR1
产物	receptor protein kinase-like protein ZAR1
Arabidopsis	`AT1G67510` (AT1G67510) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843072] identity=68.4; qcov=0.989; evalue=0; confidence=high
Rice	`Os12g0235700` - identity=54; qcov=1.03; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131025407

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811136.1`
2	Nucleus	细胞核	0.00000	`XP_057811136.1`
3	Chromosome	染色体	0.00000	`XP_057811136.1`
4	Centromere	着丝粒	0.00000	`XP_057811136.1`
5	Chromatin	染色质	0.00000	`XP_057811136.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57146947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B20,B40,B98,C60
`Chr5:57147037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,C78
`Chr5:57147088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,B78
`Chr5:57147301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B68
`Chr5:57147362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:57147402`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:57147493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,C34
`Chr5:57147562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B33,B35,C17,C82
`Chr5:57147669`	`GCT`	`G`	2bp_deletion	frameshift_variant	1	B99
`Chr5:57147669`	`GCT`	`G`	2bp_deletion	CDS_variant	1	B99
`Chr5:57147821`	`AGT`	`A`	2bp_deletion	frameshift_variant	1	C7
`Chr5:57147821`	`AGT`	`A`	2bp_deletion	CDS_variant	1	C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811136.1

724 aa

362

724

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 23-64 aa PF00560 LRR_1 99-119 aa PF00560 LRR_1 122-143 aa PF00560 LRR_1 146-168 aa PF13855 LRR_8 169-220 aa PF00560 LRR_1 170-189 aa PF00560 LRR_1 195-217 aa PF00560 LRR_1 223-242 aa PF00069 Pkinase 430-677 aa PF07714 PK_Tyr_Ser-Thr 431-719 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811136.1`	Pfam	`PF08263`	LRRNT_2	Family	23	64	5.1e-10	40.2	Leucine rich repeat N-terminal domain
`XP_057811136.1`	Pfam	`PF00560`	LRR_1	Repeat	99	119	4e-22	74.3	Leucine Rich Repeat
`XP_057811136.1`	Pfam	`PF00560`	LRR_1	Repeat	122	143	4e-22	74.3	Leucine Rich Repeat
`XP_057811136.1`	Pfam	`PF00560`	LRR_1	Repeat	146	168	4e-22	74.3	Leucine Rich Repeat
`XP_057811136.1`	Pfam	`PF13855`	LRR_8	Repeat	169	220	2.4e-17	63.2	Leucine rich repeat
`XP_057811136.1`	Pfam	`PF00560`	LRR_1	Repeat	170	189	4e-22	74.3	Leucine Rich Repeat
`XP_057811136.1`	Pfam	`PF00560`	LRR_1	Repeat	195	217	4e-22	74.3	Leucine Rich Repeat
`XP_057811136.1`	Pfam	`PF00560`	LRR_1	Repeat	223	242	4e-22	74.3	Leucine Rich Repeat
`XP_057811136.1`	Pfam	`PF00069`	Pkinase	Domain	430	677	4.4e-29	102.4	Protein kinase domain
`XP_057811136.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	431	719	6.1e-28	98.6	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955153.1
AAAAAAGAAAAACATAATTGTGGAACTGCAAGAACACTTTGCACTGAAAAAACAAAAGTCTTGTTGCTTTTCTTCTACTTCTTCTTCTTCTTTTGTCTCTCTCTCCTTTGATGATGAGAGAGAAAAAGAAGCCCTCTGTGTTTGGGCGCGGAGTGGGTCCGAGCAACAAGCACCCGTCTCCTACTCAAGTCTTTTTCTCATAAATTCCTCAACTCCCTCGTCGCCAACTCCATTTCGATTTCATCCTCTCTTTTTCCCAC...

CDS

1 records

下载 CDS FASTA

LOC131025407
ATGTTGCTCAGGAATTTGCGTTTGTCGGCATTCCTCGTACTAAATCTTTGTCTGTGCATCGTTTCCTTGAACCCCGATGGCCTGTCGCTGCTGTCCCTCAAGTCCGCCGTGGACGCCGCCTCCGCCGCCGCCTTCTTCTCCGACTGGAACGAGGACGACGCCACGCCGTGCCACTGGACGGGAATCTCGTGTATGAACGTCTCCGGCTCGGAGGATCCCCGCGTGGTCGGAATTTCCTTCGCCGGAAAGAATCTCCGCGC...

Protein

1 records

下载 Protein FASTA

XP_057811136.1
MLLRNLRLSAFLVLNLCLCIVSLNPDGLSLLSLKSAVDAASAAAFFSDWNEDDATPCHWTGISCMNVSGSEDPRVVGISFAGKNLRAYIPSELGSLIYLRRLNLHGNNFYGGIPDQLFNASSLHSIFLYGNNLSGSLPPSLCSVPRLQNLDLSNNTLSGQLPKFLQNCRQLQRLILAGNRFSGQIPEGIFPELANLEQLDLSGNELNGSIPDDMGELKSLSGTLNLSYNHFTGRIPKSLGDLPLTVSFDLRGNDLSGEIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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