当前解析结果
SmilChr05G004363| 统一新 Gene ID | SmilChr05G004363 |
|---|---|
| 名称 | SmilChr05G004363 |
| 描述 | uncharacterized SmilChr05G004363 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 57177963 - 57186116 / - |
| NCBI Gene ID | LOC131025412 |
|---|---|
| GeneID | 131025412 |
| locus_tag | - |
| NCBI Name | LOC131025412 |
| 原始查询 | SmilChr05G004363 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843062]; symbol=AT1G67420; hit=AT1G67420; species=arabidopsis; confidence=high |
| 产物 | Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843062]; symbol=AT1G67420; hit=AT1G67420; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G67420 (AT1G67420)Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843062] identity=57.4; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0295800- identity=57; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0006508 (proteolysis); GO:0008235 (metalloexopeptidase activity) |
| KEGG | - |
| Pfam | PF04389 (Peptidase_M28); PF22248 (ERMP1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025412 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057811147.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057811147.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811147.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811147.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811147.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:57178403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B91 |
Chr5:57178443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr5:57178828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr5:57179448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr5:57179450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B22,B51,C10 |
Chr5:57179480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr5:57181999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr5:57182154 |
A |
AG |
1bp_insertion | frameshift_variant | 25 | A11,B101,B106,B114,B117,B131,B138,B21,B31,B34,B37,B53,B56,B78,B79,B8,B87,C13,C33,C36,C4,C47,C64,C66,D2 |
Chr5:57182221 |
T |
TAA |
2bp_insertion | frameshift_variant | 25 | A4,A9,B1,B102,B119,B125,B127,B63,B75,B79,C16,C26,C36,C4,C48,C56,C6,C64,C7,C73,C76,C84,D5,D7,D9 |
Chr5:57182263 |
C |
CT |
1bp_insertion | frameshift_variant | 19 | A5,A7,A8,B102,B122,B17,B22,B35,B46,B50,B57,B81,B89,C53,C6,C63,D10,D3,D4 |
Chr5:57182424 |
A |
ATG |
2bp_insertion | frameshift_variant | 71 | A1,A10,A19,A21,A25,A7,A9,B10,B100,B109,B111,B112,B114,B115,B120,B122,B128,B132,B135,B136,B140,B17,B18,B21,B22,B24,B26,B3,B36,B38,B39,B44,B53,B6,B61,B65,B66,B70,B74,B75,B79,B85,B89,C10,C11,C18,C19,C22,C25,C27,C28,C29,C3,C34,C38,C46,C49,C50,C52,C65,C67,C68,C69,C77,C8,C86,C87,D1,D3,D4,D6 |
Chr5:57182491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057811147.1PF04389
Peptidase_M28 131-324 aa
PF22248
ERMP1_C 651-874 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811147.1 |
Pfam | PF04389 |
Peptidase_M28 | Domain | 131 | 324 | 1.2e-41 | 143.3 | Peptidase family M28 |
XP_057811147.1 |
Pfam | PF22248 |
ERMP1_C | Domain | 651 | 874 | 5.4e-27 | 95.4 | Endoplasmic reticulum metallopeptidase 1, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。