当前解析结果
SmilChr05G004383| 统一新 Gene ID | SmilChr05G004383 |
|---|---|
| 名称 | SmilChr05G004383 |
| 描述 | calmodulin-binding transcription activator 4 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 57310871 - 57318780 / - |
| NCBI Gene ID | LOC131025429 |
|---|---|
| GeneID | 131025429 |
| locus_tag | - |
| NCBI Name | LOC131025429 |
| 原始查询 | SmilChr05G004383 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calmodulin-binding transcription activator 4 |
| 产物 | calmodulin-binding transcription activator 4 |
| Arabidopsis | AT1G67310 (AT1G67310)Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain [Source:NCBI gene (formerly Entrezgene);Acc:843051] identity=59.5; qcov=0.634; evalue=0; confidence=high |
| Rice | Os04g0388500- identity=44.5; qcov=1.11; evalue=0; confidence=medium |
| GO | GO:0003690 (double-stranded DNA binding); GO:0003712 (transcription coregulator activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF00612 (IQ); PF01833 (TIG); PF03859 (CG-1); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025429 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811185.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057811185.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057811185.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811185.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811185.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:57312451 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C34 |
Chr5:57312451 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C34 |
Chr5:57312497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:57313002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B122,B70 |
Chr5:57313173 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B123 |
Chr5:57313173 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B123 |
Chr5:57313203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr5:57313616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:57313853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,D9 |
Chr5:57314714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr5:57315183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,D9 |
Chr5:57317434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B56,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811185.1PF03859
CG-1 13-126 aa
PF01833
TIG 369-444 aa
PF12796
Ank_2 547-615 aa
PF13637
Ank_4 576-610 aa
PF13606
Ank_3 589-615 aa
PF00023
Ank 589-619 aa
PF00612
IQ 763-781 aa
PF00612
IQ 786-805 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811185.1 |
Pfam | PF03859 |
CG-1 | Domain | 13 | 126 | 5.9e-47 | 158.9 | CG-1 domain |
XP_057811185.1 |
Pfam | PF01833 |
TIG | Domain | 369 | 444 | 1.1e-07 | 32.4 | IPT/TIG domain |
XP_057811185.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 547 | 615 | 3.1e-11 | 44.4 | Ankyrin repeats (3 copies) |
XP_057811185.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 576 | 610 | 2.7e-07 | 31.4 | Ankyrin repeats (many copies) |
XP_057811185.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 589 | 615 | 1.6e-06 | 28.6 | Ankyrin repeat |
XP_057811185.1 |
Pfam | PF00023 |
Ank | Repeat | 589 | 619 | 2.4e-07 | 31.4 | Ankyrin repeat |
XP_057811185.1 |
Pfam | PF00612 |
IQ | Motif | 763 | 781 | 9.3e-11 | 41.3 | IQ calmodulin-binding motif |
XP_057811185.1 |
Pfam | PF00612 |
IQ | Motif | 786 | 805 | 9.3e-11 | 41.3 | IQ calmodulin-binding motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。