Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004386`

染色体: Chr05 坐标: 57328916-57332192 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004386`
名称	SmilChr05G004386
描述	agamous-like MADS-box protein AGL27
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57328916 - 57332192 / `-`

ID 对照

NCBI Gene ID	`LOC131025433`
GeneID	`131025433`
locus_tag	`-`
NCBI Name	`LOC131025433`
原始查询	`SmilChr05G004386`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	agamous-like MADS-box protein AGL27
产物	agamous-like MADS-box protein AGL27
Arabidopsis	`AT1G77080` (MAF1) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:844042] identity=45.7; qcov=0.897; evalue=2.37e-43; confidence=medium
Rice	`Os08g0531700` (OsMADS7) - identity=37.9; qcov=1.01; evalue=1.84e-36; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131025433

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811189.1`
2	Chromosome	染色体	0.00000	`XP_057811189.1`
3	Centromere	着丝粒	0.00000	`XP_057811189.1`
4	Chromatin	染色质	0.00000	`XP_057811189.1`
5	Telomere	端粒	0.00000	`XP_057811189.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57329361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B104,B131,B2
`Chr5:57329382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B71,B76,C26,C39
`Chr5:57329512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B104,B131,B2
`Chr5:57330077`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B33
`Chr5:57330077`	`CG`	`C`	1bp_deletion	CDS_variant	1	B33
`Chr5:57331476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr5:57331526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B121,C74
`Chr5:57331566`	`TC`	`T`	1bp_deletion	frameshift_variant	11	B32,B37,B45,B58,C33,C52,C53,C59,C64,C65,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811189.1

196 aa

196

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 87-167 aa

XP_057811191.1

195 aa

195

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 87-168 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811189.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.3e-24	86.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057811189.1`	Pfam	`PF01486`	K-box	Family	87	167	3.2e-10	40.7	K-box region
`XP_057811191.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.3e-24	86.1	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057811191.1`	Pfam	`PF01486`	K-box	Family	87	168	6.5e-11	43.0	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955208.1
GGTGAAAATCGAACGCTAAATTCCTCGAGTAATTTACACCACCGTTCCAATACATTCGTAAAATCATTAATGTGGATAGTAAAAAAAAAAACTAGCTATAGACATAAAATATTTATTTTATTGATAATCTCAAACAACTTGTTTTTTTTTTTTTTTAATTAAATCTACCCTCCCATTCCATTCCATCCATGGGAATTGGCAATTTGGCATGCACTTGAATGCTAGTTATGGGCACAAACCTAACACTGTCATTACTGAGC...

XM_057955206.1
GGTGAAAATCGAACGCTAAATTCCTCGAGTAATTTACACCACCGTTCCAATACATTCGTAAAATCATTAATGTGGATAGTAAAAAAAAAAACTAGCTATAGACATAAAATATTTATTTTATTGATAATCTCAAACAACTTGTTTTTTTTTTTTTTTAATTAAATCTACCCTCCCATTCCATTCCATCCATGGGAATTGGCAATTTGGCATGCACTTGAATGCTAGTTATGGGCACAAACCTAACACTGTCATTACTGAGC...

CDS

2 records

下载 CDS FASTA

LOC131025433
ATGGGGAGGAGGAAGCTCGAGATTAAGCGAATCGAAGATAAGAGCTCGCGCCAGGTTACCTTCTCCAAGCGCCGCAATGGATTGCTCAAGAAAGCTAAAGAGCTATCGGTGCTCTGCGATCTGGATATCGGCGCCATAATCTATTCCTGCCGAGGCAAGCTCTACCACTACTGCAGCACCAACAGCTTGAGTGAGATCCTGCAACGATATCATAGTCGTGCTGAGACAGAGGCAGGCCCCTCCACTCAAGTTTGTGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057811189.1
MGRRKLEIKRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAIIYSCRGKLYHYCSTNSLSEILQRYHSRAETEAGPSTQVCEKQAKYSRFMTCEELLQVVEREFEEPSADDLSVADFMHLEKQFETALIQARATKTHLLLKTISSLEEKEKLLEEEKILLQEKQINGSKGKSKTKIPTIDLNALPFEERMSD

XP_057811191.1
MGRRKLEIKRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAIIYSCRGKLYHYCSTNSLSEILQRYHSRAETEAGPSTQVCEKQAKYSRFMTCEELLQVVEREFEEPSADDLSVADFMHLEKQFETALIQARATKTHLLLKTISSLEEKEKLLEEEKILLQEKINGSKGKSKTKIPTIDLNALPFEERMSD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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