Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004389`

染色体: Chr05 坐标: 57339325-57351606 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004389`
名称	SmilChr05G004389
描述	agamous-like MADS-box protein AGL27
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57339325 - 57351606 / `+`

ID 对照

NCBI Gene ID	`LOC131025436`
GeneID	`131025436`
locus_tag	`-`
NCBI Name	`LOC131025436`
原始查询	`SmilChr05G004389`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	agamous-like MADS-box protein AGL27
产物	agamous-like MADS-box protein AGL27
Arabidopsis	`AT4G09960` (STK) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:826586] identity=51.9; qcov=0.485; evalue=1.82e-23; confidence=medium
Rice	`Os01g0883100` (OsMADS2) - identity=69.5; qcov=0.353; evalue=9.21e-24; confidence=low
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131025436

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811192.1`
2	Cytoplasm	细胞质	0.20000	`XP_057811194.1`
3	Chromosome	染色体	0.00000	`XP_057811192.1`
4	Centromere	着丝粒	0.00000	`XP_057811192.1`
5	Chromatin	染色质	0.00000	`XP_057811192.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57339728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:57339738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C58,D4
`Chr5:57339861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr5:57340974`	`GT`	`G`	1bp_deletion	frameshift_variant	14	A13,B137,B26,B27,B36,B4,B8,B83,B84,B88,C29,C40,C5,C84
`Chr5:57341078`	`C`	`CG`	1bp_insertion	frameshift_variant	3	A16,A2,D10
`Chr5:57341078`	`C`	`CG`	1bp_insertion	CDS_variant	3	A16,A2,D10
`Chr5:57341176`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,A2,D10
`Chr5:57349818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,B46
`Chr5:57350759`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C48,C60
`Chr5:57351086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,D10
`Chr5:57351096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811192.1

187 aa

187

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 83-168 aa

XP_057811193.1

187 aa

187

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 83-168 aa

XP_057811194.1

168 aa

168

SRF-TF

PF00319 SRF-TF 10-57 aa

XP_057811195.1

167 aa

167

SRF-TF

PF00319 SRF-TF 10-57 aa

XP_057811196.1

167 aa

167

SRF-TF

PF00319 SRF-TF 10-57 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811192.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	3.5e-24	84.7	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057811192.1`	Pfam	`PF01486`	K-box	Family	83	168	2.9e-11	44.1	K-box region
`XP_057811193.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	3.5e-24	84.7	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057811193.1`	Pfam	`PF01486`	K-box	Family	83	168	2.9e-11	44.1	K-box region
`XP_057811194.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.3e-24	85.3	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057811195.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.3e-24	85.3	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057811196.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.3e-24	85.3	SRF-type transcription factor (DNA-binding and dimerisation domain)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057955209.1
ACACACGTGTTGAATATGTAGCTGCATGAATGCTCTAGCTTCTTCTCTTATTACTATTATTTTTTTTGTTTTTTTTTTTTACCGTAAAGTAGAAGAGAATAGCGATAGGGAGTGGGAGCGGCAAAGGCAAAAACTGCCGCTGCGAGCGACCACAAGCAATCGACAGATTCGCTTTCCTCCACAAATATCTCTCAATGCCGCTTCATTTCCAGACCTAATTTTTGTGTTCAATGGGGAGGAGGAAGCTCGAGATTAAGCGA...

XM_057955211.1
TACTATTATTTTTTTTGTTTTTTTTTTTTACCGTAAAGTAGAAGAGAATAGCGATAGGGAGTGGGAGCGGCAAAGGCAAAAACTGCCGCTGCGAGCGACCACAAGCAATCGACAGATTCGCTTTCCTCCACAAATATCTCTCAATGCCGCTTCATTTCCAGACCTAATTTTTGTGTTCAATGGGGAGGAGGAAGCTCGAGATTAAGCGAATCGAAGATAAGAGCTCGCGCCAGGTTACCTTCTCCAAGCGCCGCAATGGA...

CDS

5 records

下载 CDS FASTA

LOC131025436
ATGGGGAGGAGGAAGCTCGAGATTAAGCGAATCGAAGATAAGAGCTCGCGCCAGGTTACCTTCTCCAAGCGCCGCAATGGATTGCTCAAGAAAGCTAAAGAGCTATCGGTGCTCTGCGATCTGGATATCGGCGCCGTAATCTATTCCTGCCGGGGCAAGCTCTACCCCTACTGCAGCACCAACAGCTTGAGTGAGATCCTGCAACGATATCATAGTCGGACTGAGACAGATGCAGGCCCCTCAAGTCAAAGTTGTGAGAC...

Protein

5 records

下载 Protein FASTA

XP_057811192.1
MGRRKLEIKRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAVIYSCRGKLYPYCSTNSLSEILQRYHSRTETDAGPSSQSCETQAKYSRFLTCEELLQVVERELEEPSTDDLSVADFIHLEKQFETALIQARATKTQLLLKSISSLEGKEKLLEEEKMLLKGKIGGSKTKIPVIDLNALPSEE

XP_057811193.1
MGRRKLEIKRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAVIYSCRGKLYPYCSTNSLSEILQRYHSRTETDAGPSSQSCETQAKYSRFLTCEELLQVVERELEEPSTDDLSVADFIHLEKQFETALIQARATKTQLLLKSISSLEGKEKLLEEEKMLLKGKIGGSKTKIPVIDLNALPSEE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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