当前解析结果
SmilChr05G004393| 统一新 Gene ID | SmilChr05G004393 |
|---|---|
| 名称 | SmilChr05G004393 |
| 描述 | glucose-6-phosphate 1-dehydrogenase, chloroplastic-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 57368425 - 57372651 / + |
| NCBI Gene ID | LOC131025440 |
|---|---|
| GeneID | 131025440 |
| locus_tag | - |
| NCBI Name | LOC131025440 |
| 原始查询 | SmilChr05G004393 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glucose-6-phosphate 1-dehydrogenase, chloroplastic-like |
| 产物 | glucose-6-phosphate 1-dehydrogenase%2C chloroplastic-like |
| Arabidopsis | AT5G13110 (G6PD2)glucose-6-phosphate dehydrogenase 2 [Source:NCBI gene (formerly Entrezgene);Acc:831150] identity=82.1; qcov=0.946; evalue=0; confidence=high |
| Rice | Os07g0406300 (OsG6PDH3)- identity=82.7; qcov=0.899; evalue=0; confidence=high |
| GO | GO:0004345 (glucose-6-phosphate dehydrogenase activity); GO:0006006 (glucose metabolic process); GO:0009051 (pentose-phosphate shunt, oxidative branch); GO:0009570 (chloroplast stroma); GO:0050661 (NADP binding) |
| KEGG | smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00479 (G6PD_N); PF02781 (G6PD_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025440 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057811205.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057811205.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811205.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811205.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811205.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:57369545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B107,B130,B131,B2 |
Chr5:57369627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B23,B48,B60,B68 |
Chr5:57370067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr5:57370645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr5:57371409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr5:57371744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr5:57372251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B94 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057811205.1PF00479
G6PD_N 114-292 aa
PF02781
G6PD_C 295-589 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811205.1 |
Pfam | PF00479 |
G6PD_N | Domain | 114 | 292 | 3.4e-59 | 201.3 | Glucose-6-phosphate dehydrogenase, NAD binding domain |
XP_057811205.1 |
Pfam | PF02781 |
G6PD_C | Domain | 295 | 589 | 4.9e-114 | 381.1 | Glucose-6-phosphate dehydrogenase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。