Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004393

染色体: Chr05 坐标: 57368425-57372651 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004393
名称SmilChr05G004393
描述glucose-6-phosphate 1-dehydrogenase, chloroplastic-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向57368425 - 57372651 / +

ID 对照

NCBI Gene IDLOC131025440
GeneID131025440
locus_tag-
NCBI NameLOC131025440
原始查询SmilChr05G004393

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glucose-6-phosphate 1-dehydrogenase, chloroplastic-like
产物glucose-6-phosphate 1-dehydrogenase%2C chloroplastic-like
ArabidopsisAT5G13110 (G6PD2)
glucose-6-phosphate dehydrogenase 2 [Source:NCBI gene (formerly Entrezgene);Acc:831150]
identity=82.1; qcov=0.946; evalue=0; confidence=high
RiceOs07g0406300 (OsG6PDH3)
-
identity=82.7; qcov=0.899; evalue=0; confidence=high
GOGO:0004345 (glucose-6-phosphate dehydrogenase activity); GO:0006006 (glucose metabolic process); GO:0009051 (pentose-phosphate shunt, oxidative branch); GO:0009570 (chloroplast stroma); GO:0050661 (NADP binding)
KEGGsmil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF00479 (G6PD_N); PF02781 (G6PD_C)
InterPro-
eggNOG-
NRGeneID:131025440

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057811205.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057811205.1
3 Nucleus 细胞核 0.00000 XP_057811205.1
4 Chromosome 染色体 0.00000 XP_057811205.1
5 Centromere 着丝粒 0.00000 XP_057811205.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:57369545 C T EMS_canonical_SNV CDS_variant 5 B103,B107,B130,B131,B2
Chr5:57369627 C T EMS_canonical_SNV CDS_variant 5 A11,B23,B48,B60,B68
Chr5:57370067 G A EMS_canonical_SNV CDS_variant 1 C51
Chr5:57370645 C T EMS_canonical_SNV CDS_variant 1 A16
Chr5:57371409 C T EMS_canonical_SNV CDS_variant 1 B88
Chr5:57371744 G A EMS_canonical_SNV CDS_variant 1 A1
Chr5:57372251 C T EMS_canonical_SNV CDS_variant 2 B35,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057811205.1
596 aa
N
1
298
596
G6PD_N
G6PD_C
C
PF00479 G6PD_N 114-292 aa PF02781 G6PD_C 295-589 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057811205.1 Pfam PF00479 G6PD_N Domain 114 292 3.4e-59 201.3 Glucose-6-phosphate dehydrogenase, NAD binding domain
XP_057811205.1 Pfam PF02781 G6PD_C Domain 295 589 4.9e-114 381.1 Glucose-6-phosphate dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057955222.1
GTGACTGATTGCATAATAAAGAATCAATTAATTTATTAATTTGAAGGTGTCGCAACTCACAAGTCACAAAGTAGCCTTTGCTCATCGTCAAAGTGGCAAAACCCATACATTTCATCCAGACTCAGCAGCCTTTCGGAGATCTCAAGGGCCCTCTCGACAATTTCTAAGTTGTAGTATATCAGTAGACAATCTCTCTCTCTCACAGTTGAATTTGGGAGGAATTGCGTTTGAGACTATGGCCGCAAGTCCTATCTCTGTGT...

CDS

1 records

下载 CDS FASTA
LOC131025440
ATGGCCGCAAGTCCTATCTCTGTGTCCAGACACTGCTGTTCTTCATCTTCAGCTTATTCCAATTCATCCTCTACTTGGTTTCACCAAAATCCCAGTAAATTTCTATTTCCTGCCGCTTCTCCTAAAACAAAAAATGGCTCTTTGCAATTCAAGGGCAACGCCGTTCCTAGTGTGATTTTCATGCAAGATGGTTCTTTGGCTGCAGCAGTTGCTGGACTGGAAAATGAAGCTCCTTGGAAAAAATTGAAAAATGGGCTGAC...

Protein

1 records

下载 Protein FASTA
XP_057811205.1
MAASPISVSRHCCSSSSAYSNSSSTWFHQNPSKFLFPAASPKTKNGSLQFKGNAVPSVIFMQDGSLAAAVAGLENEAPWKKLKNGLTSVTPPEEKKQLGNFDVNDDKSTVTITVVGASGDLAKKKIFPALFALYYEDCLPEHFTIFGYARSKMTDAELRNMVSKTLTCRIDKRENCGEKMEQFLQRCFYHSGQYDSQKDFAELDKTLKEHEAGRVSNRLFYLSIPPNIFVDAVKCASLSASSSAGWTRVIVEKPFGRDSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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