Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000001

染色体: Chr06 坐标: 99341-103864 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000001
名称SmilChr06G000001
描述uncharacterized SmilChr06G000001
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向99341 - 103864 / -

ID 对照

NCBI Gene IDLOC130988946
GeneID130988946
locus_tag-
NCBI NameLOC130988946
原始查询SmilChr06G000001

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述SEC10; symbol=SEC10; hit=Os12g0238100; species=rice; confidence=low
产物SEC10; symbol=SEC10; hit=Os12g0238100; species=rice; confidence=low
ArabidopsisAT5G12370 (SEC10)
exocyst complex component sec10 [Source:NCBI gene (formerly Entrezgene);Acc:831112]
identity=66.7; qcov=0.385; evalue=5.38e-12; confidence=low
RiceOs12g0238100 (SEC10)
-
identity=73.8; qcov=0.385; evalue=1.51e-13; confidence=low
GOGO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006364 (rRNA processing)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130988946

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057768922.1
2 Nucleus 细胞核 0.60000 XP_057768919.1
3 Cytosol 细胞质基质 0.60000 XP_057768919.1
4 Chromosome 染色体 0.00000 XP_057768922.1
5 Centromere 着丝粒 0.00000 XP_057768922.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:99573 G A EMS_canonical_SNV stop_gained 1 C58
Chr6:99573 G A EMS_canonical_SNV CDS_variant 1 C58
Chr6:99621 C CA 1bp_insertion frameshift_variant 36 A19,B103,B11,B110,B112,B121,B133,B22,B29,B37,B45,B5,B52,B6,B69,B7,B74,B79,B86,B9,B97,B98,C12,C17,C28,C3,C31,C4,C43,C63,C67,C69,C81,D2,D4,D6
Chr6:99622 T TG 1bp_insertion frameshift_variant 36 A19,B103,B11,B110,B112,B121,B133,B22,B29,B37,B45,B5,B52,B6,B69,B7,B74,B79,B86,B9,B97,B98,C12,C17,C28,C3,C31,C4,C43,C63,C67,C69,C81,D2,D4,D6
Chr6:99644 GC G 1bp_deletion frameshift_variant 1 D10
Chr6:99644 GC G 1bp_deletion CDS_variant 1 D10
Chr6:99666 G GCA 2bp_insertion frameshift_variant 5 A7,B110,B126,B20,C87
Chr6:99666 G GCA 2bp_insertion CDS_variant 5 A7,B110,B126,B20,C87
Chr6:100076 G A EMS_canonical_SNV CDS_variant 5 A8,B32,B63,B81,C24
Chr6:100112 C CA 1bp_insertion frameshift_variant 4 A14,B104,B23,B33
Chr6:100112 C CA 1bp_insertion CDS_variant 4 A14,B104,B23,B33
Chr6:100127 G A EMS_canonical_SNV CDS_variant 5 B2,B22,B63,B72,C23

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

50 records

下载 cDNA FASTA
XR_009090332.1
TAAATTTTAACTGACTGTATATGAGTGAATATTGAAAAAAGAAAGTAGATAAGAGTTTGCAATAATAAAAATTAATATTATGAAAAGGCAAAAAAAAGTTAAAAAAAGAATTAAAAAATATATTTATTCCAAAAAGAAGATTGAGGAGAGAGAATTTTTTAGTTTTTTTTTTAAAAAATAATTATGTAAATAATTTACACGTAATTTATTGTTATTATTATTAGTTGTCTATTTAATTTGAATTTTGTTCTTATTTAAAT...
XR_009090328.1
TAAATTTTAACTGACTGTATATGAGTGAATATTGAAAAAAGAAAGTAGATAAGAGTTTGCAATAATAAAAATTAATATTATGAAAAGGCAAAAAAAAGTTAAAAAAAGAATTAAAAAATATATTTATTCCAAAAAGAAGATTGAGGAGAGAGAATTTTTTAGTTTTTTTTTTAAAAAATAATTATGTAAATAATTTACACGTAATTTATTGTTATTATTATTAGTTGTCTATTTAATTTGAATTTTGTTCTTATTTAAAT...

CDS

3 records

下载 CDS FASTA
LOC130988946
ATGGCTCAGTTGAAAGAGACTAACAATGGGACAAGGACTGGGAGGTTTTCCAAATCTCCATCAACTGACCCCTATGTGCTTGTTCTAGTCATTGATGACTTTAAGCTGGAAAAATGTGTTGATGGCTTGTTTGATAGTTTTGCAAGGTTGGATTCACGTATATATAGTGTTGGCCAAACTGCTGCTAACGTAGGAGACCACCTGCAGGTAAAGATGCTTAAAAAGGAACATAAAAAGGCAGAAGAACATGAAAAGGCAAA...
LOC130988946
ATGCAAGTAACAAAATGGACCCTTATTGATGTGGTGCTGACATCATGTTATATTTCTTGTTGTAGGAAACTTTATTGCTGTTGGGTCAATGGAACATGGGACCTTGATATTGTGGACGAAGTCCAGGCATCTGCTACCTTAGGTGGTGTTGCTGAAAAGAAGAAAAAGGGGAAGAAGAAATATATTAAATACAAGGATGGCAGCCACATAGATTCAGTTCTTGGACTTGCCTGGAACAAGGAGTTTAGGAACACTCTTGC...

Protein

3 records

下载 Protein FASTA
XP_057768919.1
MQVTKWTLIDVVLTSCYISCCRKLYCCWVNGTWDLDIVDEVQASATLGGVAEKKKKGKKKYIKYKDGSHIDSVLGLAWNKEFRNTLASASADKLVKIWDVATETFNLTLENHTDKV
XP_057768921.1
MQVTKWTLIDVVLTSCYISCCRKLYCCWVNGTWDLDIVDEVQASATLGGVAEKKKKGKKKYIKYKDGSHIDSVLGLAWNKEFRNTLASASADKLVKIWDVATETFNLTLENHTDKV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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