当前解析结果
SmilChr06G000001| 统一新 Gene ID | SmilChr06G000001 |
|---|---|
| 名称 | SmilChr06G000001 |
| 描述 | uncharacterized SmilChr06G000001 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 99341 - 103864 / - |
| NCBI Gene ID | LOC130988946 |
|---|---|
| GeneID | 130988946 |
| locus_tag | - |
| NCBI Name | LOC130988946 |
| 原始查询 | SmilChr06G000001 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SEC10; symbol=SEC10; hit=Os12g0238100; species=rice; confidence=low |
| 产物 | SEC10; symbol=SEC10; hit=Os12g0238100; species=rice; confidence=low |
| Arabidopsis | AT5G12370 (SEC10)exocyst complex component sec10 [Source:NCBI gene (formerly Entrezgene);Acc:831112] identity=66.7; qcov=0.385; evalue=5.38e-12; confidence=low |
| Rice | Os12g0238100 (SEC10)- identity=73.8; qcov=0.385; evalue=1.51e-13; confidence=low |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006364 (rRNA processing) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988946 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057768922.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057768919.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057768919.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768922.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768922.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:99573 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C58 |
Chr6:99573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr6:99621 |
C |
CA |
1bp_insertion | frameshift_variant | 36 | A19,B103,B11,B110,B112,B121,B133,B22,B29,B37,B45,B5,B52,B6,B69,B7,B74,B79,B86,B9,B97,B98,C12,C17,C28,C3,C31,C4,C43,C63,C67,C69,C81,D2,D4,D6 |
Chr6:99622 |
T |
TG |
1bp_insertion | frameshift_variant | 36 | A19,B103,B11,B110,B112,B121,B133,B22,B29,B37,B45,B5,B52,B6,B69,B7,B74,B79,B86,B9,B97,B98,C12,C17,C28,C3,C31,C4,C43,C63,C67,C69,C81,D2,D4,D6 |
Chr6:99644 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr6:99644 |
GC |
G |
1bp_deletion | CDS_variant | 1 | D10 |
Chr6:99666 |
G |
GCA |
2bp_insertion | frameshift_variant | 5 | A7,B110,B126,B20,C87 |
Chr6:99666 |
G |
GCA |
2bp_insertion | CDS_variant | 5 | A7,B110,B126,B20,C87 |
Chr6:100076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B32,B63,B81,C24 |
Chr6:100112 |
C |
CA |
1bp_insertion | frameshift_variant | 4 | A14,B104,B23,B33 |
Chr6:100112 |
C |
CA |
1bp_insertion | CDS_variant | 4 | A14,B104,B23,B33 |
Chr6:100127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B22,B63,B72,C23 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
50 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。