Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000009`

染色体: Chr06 坐标: 190972-197249 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000009`
名称	SmilChr06G000009
描述	adenylate kinase 5, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	190972 - 197249 / `+`

ID 对照

NCBI Gene ID	`LOC130987546`
GeneID	`130987546`
locus_tag	`-`
NCBI Name	`LOC130987546`
原始查询	`SmilChr06G000009`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	adenylate kinase 5, chloroplastic
产物	adenylate kinase 5%2C chloroplastic
Arabidopsis	`AT5G35170` (AT5G35170) adenylate kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833471] identity=64.5; qcov=0.964; evalue=0; confidence=high
Rice	`Os08g0288200` - identity=62.4; qcov=0.902; evalue=0; confidence=high
GO	GO:0004017 (AMP kinase activity); GO:0004127 (GO:0004127); GO:0004550 (nucleoside diphosphate kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0009142 (nucleoside triphosphate biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00406 (ADK); PF09353 (DUF1995); PF13207 (AAA_17)
InterPro	-
eggNOG	-
NR	GeneID:130987546

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057767086.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057767086.1`
3	Nucleus	细胞核	0.00000	`XP_057767086.1`
4	Chromosome	染色体	0.00000	`XP_057767086.1`
5	Centromere	着丝粒	0.00000	`XP_057767086.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:191206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B111
`Chr6:191275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,A4,C37
`Chr6:191306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B4,B62,C52
`Chr6:191325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,B22
`Chr6:191327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,B38,B39,B77,C41
`Chr6:193393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr6:193395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C40
`Chr6:193411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C40
`Chr6:193416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B16,B66,C79,D1
`Chr6:193572`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	A16
`Chr6:193572`	`AAG`	`A`	2bp_deletion	CDS_variant	1	A16
`Chr6:193623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767086.1

592 aa

296

592

ADK

AAA_17

DUF1995

PF00406 ADK 77-253 aa PF13207 AAA_17 79-197 aa PF09353 DUF1995 325-567 aa

XP_057767087.1

549 aa

274

549

ADK

DUF1995

PF00406 ADK 95-210 aa PF09353 DUF1995 282-524 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767086.1`	Pfam	`PF00406`	ADK	Domain	77	253	5.2e-48	163.7	Adenylate kinase
`XP_057767086.1`	Pfam	`PF13207`	AAA_17	Domain	79	197	2e-26	93.6	AAA domain
`XP_057767086.1`	Pfam	`PF09353`	DUF1995	Domain	325	567	1.4e-41	143.4	Domain of unknown function (DUF1995)
`XP_057767087.1`	Pfam	`PF00406`	ADK	Domain	95	210	6.8e-22	78.9	Adenylate kinase
`XP_057767087.1`	Pfam	`PF09353`	DUF1995	Domain	282	524	1.2e-41	143.6	Domain of unknown function (DUF1995)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911103.1
TAATATATGTAAAAGTTTATTTATTTATTTGTTTGCTTATACTGTTTTATTCTTTTTTCTTTTTGGTTCATAGTGGATTTAAGGATTTTCATTTTCTGGCGGCAGTTTGTCCGTTAATTTGAGCCGTTGGCCAAAACTGTCACCCACTCCCACCGCTCACTGCGTGAGTTTGCAGCCATGTTGAGCTGCTCCGCCATTGCCACACTCTCTACAACCTCCAATCTCTCTCCTCCCGCCAAGCCCTCCCTCTCTCCGTGTCT...

XM_057911104.1
TTCTTTTTGGTTCATAGTGGATTTAAGGATTTTCATTTTCTGGCGGCAGTTTGTCCGTTAATTTGAGCCGTTGGCCAAAACTGTCACCCACTCCCACCGCTCACTGCGTGAGTTTGCAGCCATGTTGAGCTGCTCCGCCATTGCCACACTCTCTACAACCTCCAATCTCTCTCCTCCCGCCAAGCCCTCCCTCTCTCCGTGTCTCCCTTCTTCTCTCTACTTTTCATCTATTTCTCCCCCGCTGCATCTTTCATCTCATC...

CDS

2 records

下载 CDS FASTA

LOC130987546
ATGTTGAGCTGCTCCGCCATTGCCACACTCTCTACAACCTCCAATCTCTCTCCTCCCGCCAAGCCCTCCCTCTCTCCGTGTCTCCCTTCTTCTCTCTACTTTTCATCTATTTCTCCCCCGCTGCATCTTTCATCTCATCATGCGCGCGGTCATGCCTCCATCAAGGCCAAACCCCTGCGGAAGACACTCAAAATTGTAAGCTCGACGGGTGAACCACTGAGAGTGATGATATCCGGTGCCCCAGCTTCAGGGAAGGGGAC...

Protein

2 records

下载 Protein FASTA

XP_057767086.1
MLSCSAIATLSTTSNLSPPAKPSLSPCLPSSLYFSSISPPLHLSSHHARGHASIKAKPLRKTLKIVSSTGEPLRVMISGAPASGKGTQCEMIAQKFGVVHISTGDILRAEVSAGTEIGNKAKEYMNSGRLVPDEIVTAMVTTRLSLKDVKEKGWLLDGYPRSSAQAESLEKLNIRPDVYFMLEVPDDVLIDRCVGRRLDPLTGKIYHVKNFPPENEEIKDRLVTRPDDTEEKVKSRLEIYKKNVELILSTYSDVMFKING...

XP_057767087.1
MLSCSAIATLSTTSNLSPPAKPSLSPCLPSSLYFSSISPPLHLSSHHARGHASIKAKPLRKTLKIVSSTGEPLRVMISGAPASGKGTQCEMIAQKMVTTRLSLKDVKEKGWLLDGYPRSSAQAESLEKLNIRPDVYFMLEVPDDVLIDRCVGRRLDPLTGKIYHVKNFPPENEEIKDRLVTRPDDTEEKVKSRLEIYKKNVELILSTYSDVMFKINGNRAKEVVFEEIDSLLLRLQKDKEEKSKSGELIRNENQVYKLSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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