Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000013`

染色体: Chr06 坐标: 219666-234840 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000013`
名称	SmilChr06G000013
描述	dicer-like protein 4
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	219666 - 234840 / `+`

ID 对照

NCBI Gene ID	`LOC130987555`
GeneID	`130987555`
locus_tag	`-`
NCBI Name	`LOC130987555`
原始查询	`SmilChr06G000013`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dicer-like protein 4
产物	dicer-like protein 4
Arabidopsis	`AT5G20320` (DCL4) dicer-like 4 [Source:NCBI gene (formerly Entrezgene);Acc:832154] identity=50.5; qcov=0.996; evalue=0; confidence=high
Rice	`Os04g0509300` (DCL4) - identity=46.8; qcov=0.997; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0004525 (ribonuclease III activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0030422 (siRNA processing)
KEGG	-
Pfam	PF00035 (dsrm); PF00270 (DEAD); PF00271 (Helicase_C); PF00636 (Ribonuclease_3); PF03368 (Dicer_dimer); PF04851 (ResIII); PF14622 (Ribonucleas_3_3); PF14709 (DND1_DSRM)
InterPro	-
eggNOG	-
NR	GeneID:130987555

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767113.1`
2	Chromosome	染色体	0.00000	`XP_057767113.1`
3	Centromere	着丝粒	0.00000	`XP_057767113.1`
4	Chromatin	染色质	0.00000	`XP_057767113.1`
5	Telomere	端粒	0.00000	`XP_057767113.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:219875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:220590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:220629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B134,B47,C21
`Chr6:220660`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	B54
`Chr6:220660`	`ACC`	`A`	2bp_deletion	CDS_variant	1	B54
`Chr6:220693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:221042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B134,B47,C21
`Chr6:223641`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr6:224875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B122
`Chr6:226784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr6:227025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr6:227178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767113.1

1631 aa

816

1631

ResIII

DEAD

Helicase_C

Dicer_dimer

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

DND1_DSRM

dsrm

PF04851 ResIII 44-207 aa PF00270 DEAD 45-207 aa PF00271 Helicase_C 383-495 aa PF03368 Dicer_dimer 562-647 aa PF00636 Ribonuclease_3 1017-1147 aa PF14622 Ribonucleas_3_3 1203-1333 aa PF00636 Ribonuclease_3 1223-1331 aa PF14709 DND1_DSRM 1544-1619 aa PF00035 dsrm 1545-1615 aa

XP_057767114.1

1630 aa

815

1630

ResIII

DEAD

Helicase_C

Dicer_dimer

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

DND1_DSRM

dsrm

PF04851 ResIII 44-207 aa PF00270 DEAD 45-207 aa PF00271 Helicase_C 383-495 aa PF03368 Dicer_dimer 562-647 aa PF00636 Ribonuclease_3 1016-1146 aa PF14622 Ribonucleas_3_3 1202-1332 aa PF00636 Ribonuclease_3 1222-1330 aa PF14709 DND1_DSRM 1543-1618 aa PF00035 dsrm 1544-1614 aa

XP_057767115.1

1359 aa

680

1359

Helicase_C

Dicer_dimer

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

DND1_DSRM

dsrm

PF00271 Helicase_C 111-223 aa PF03368 Dicer_dimer 290-375 aa PF00636 Ribonuclease_3 745-875 aa PF14622 Ribonucleas_3_3 931-1061 aa PF00636 Ribonuclease_3 951-1059 aa PF14709 DND1_DSRM 1272-1347 aa PF00035 dsrm 1273-1343 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767113.1`	Pfam	`PF04851`	ResIII	Family	44	207	2.4e-14	54.3	Type III restriction enzyme, res subunit
`XP_057767113.1`	Pfam	`PF00270`	DEAD	Domain	45	207	4e-19	69.7	DEAD/DEAH box helicase
`XP_057767113.1`	Pfam	`PF00271`	Helicase_C	Domain	383	495	3.4e-19	69.8	Helicase conserved C-terminal domain
`XP_057767113.1`	Pfam	`PF03368`	Dicer_dimer	Domain	562	647	7.5e-28	97.1	Dicer dimerisation domain
`XP_057767113.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1017	1147	1.3e-45	155.1	Ribonuclease III domain
`XP_057767113.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	1203	1333	7.3e-34	117.4	Ribonuclease-III-like
`XP_057767113.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1223	1331	1.3e-45	155.1	Ribonuclease III domain
`XP_057767113.1`	Pfam	`PF14709`	DND1_DSRM	Domain	1544	1619	1.9e-15	57.6	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057767113.1`	Pfam	`PF00035`	dsrm	Domain	1545	1615	3.9e-11	44.1	Double-stranded RNA binding motif
`XP_057767114.1`	Pfam	`PF04851`	ResIII	Family	44	207	2.4e-14	54.3	Type III restriction enzyme, res subunit
`XP_057767114.1`	Pfam	`PF00270`	DEAD	Domain	45	207	4e-19	69.7	DEAD/DEAH box helicase
`XP_057767114.1`	Pfam	`PF00271`	Helicase_C	Domain	383	495	3.4e-19	69.8	Helicase conserved C-terminal domain
`XP_057767114.1`	Pfam	`PF03368`	Dicer_dimer	Domain	562	647	7.5e-28	97.1	Dicer dimerisation domain
`XP_057767114.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1016	1146	1.3e-45	155.0	Ribonuclease III domain
`XP_057767114.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	1202	1332	7.3e-34	117.4	Ribonuclease-III-like
`XP_057767114.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1222	1330	1.3e-45	155.0	Ribonuclease III domain
`XP_057767114.1`	Pfam	`PF14709`	DND1_DSRM	Domain	1543	1618	1.9e-15	57.6	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057767114.1`	Pfam	`PF00035`	dsrm	Domain	1544	1614	3.9e-11	44.1	Double-stranded RNA binding motif
`XP_057767115.1`	Pfam	`PF00271`	Helicase_C	Domain	111	223	3.5e-19	69.8	Helicase conserved C-terminal domain
`XP_057767115.1`	Pfam	`PF03368`	Dicer_dimer	Domain	290	375	5.5e-28	97.5	Dicer dimerisation domain
`XP_057767115.1`	Pfam	`PF00636`	Ribonuclease_3	Family	745	875	6.7e-46	156.0	Ribonuclease III domain
`XP_057767115.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	931	1061	4.3e-34	118.2	Ribonuclease-III-like
`XP_057767115.1`	Pfam	`PF00636`	Ribonuclease_3	Family	951	1059	6.7e-46	156.0	Ribonuclease III domain
`XP_057767115.1`	Pfam	`PF14709`	DND1_DSRM	Domain	1272	1347	6.7e-15	55.9	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057767115.1`	Pfam	`PF00035`	dsrm	Domain	1273	1343	2.1e-11	44.9	Double-stranded RNA binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057911130.1
ATTTAATAAAAGGAAAATAATCGTAATATTTAATCATAATTCATAAACGATTAATATTAAGGTGCGATGAAGCCGAGAAGACGACAGCAGTCATAATAATATCACGCAGCGTTTGCTTTTCTGTAAAATTTTCACACGCAAAGAAGCTCTCCACTCCACTCCACTAGCTGGTCAACCGCAGGTCAATTCACACCGTCATGTACGGCGGCGAATCCTCCGTCGCCGCGGCCAACGGGATTTCTGAGCGGCTTTTGACTCTA...

XM_057911131.1
AATATTAAGGTGCGATGAAGCCGAGAAGACGACAGCAGTCATAATAATATCACGCAGCGTTTGCTTTTCTGTAAAATTTTCACACGCAAAGAAGCTCTCCACTCCACTCCACTAGCTGGTCAACCGCAGGTCAATTCACACCGTCATGTACGGCGGCGAATCCTCCGTCGCCGCGGCCAACGGGATTTCTGAGCGGCTTTTGACTCTATCGCTCGACGGCGACGAGGAACAGCAGATTTCAGCCAAGCCGGAGAAAGACC...

CDS

3 records

下载 CDS FASTA

LOC130987555
ATGTACGGCGGCGAATCCTCCGTCGCCGCGGCCAACGGGATTTCTGAGCGGCTTTTGACTCTATCGCTCGACGGCGACGAGGAACAGCAGATTTCAGCCAAGCCGGAGAAAGACCCGAGAAAGATCGCTAGAAAGTACCAGTTAGACCTCTGTAAAAAGGCCTTGGAGGAGAATGTCGTAATTTATCTGGAAACAGGTTGTGGGAAAACCCATATTGCTGTTCTACTTATATATGAGATGGGACACCTTATTAAGAAACC...

Protein

3 records

下载 Protein FASTA

XP_057767113.1
MYGGESSVAAANGISERLLTLSLDGDEEQQISAKPEKDPRKIARKYQLDLCKKALEENVVIYLETGCGKTHIAVLLIYEMGHLIKKPQKNICIFLAPTVALVQQQAKVIANSIDFKVGIYCGTHVKSLHYWKKEVEENEILVMTPQILLHNLSHCFIKIELIALLIFDECHYAQLDSNHPYAEIMKIFYKMDVVKLPRICGMTASPKSGKGGSIDGLEALLRAKVYTVEDKDELEKFVTSPKVNVYYYSSGDRSSLPHMI...

XP_057767114.1
MYGGESSVAAANGISERLLTLSLDGDEEQQISAKPEKDPRKIARKYQLDLCKKALEENVVIYLETGCGKTHIAVLLIYEMGHLIKKPQKNICIFLAPTVALVQQQAKVIANSIDFKVGIYCGTHVKSLHYWKKEVEENEILVMTPQILLHNLSHCFIKIELIALLIFDECHYAQLDSNHPYAEIMKIFYKMDVVKLPRICGMTASPKSGKGGSIDGLEALLRAKVYTVEDKDELEKFVTSPKVNVYYYSSGDRSSLPHMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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