当前解析结果
SmilChr06G000015| 统一新 Gene ID | SmilChr06G000015 |
|---|---|
| 名称 | SmilChr06G000015 |
| 描述 | DNA replication licensing factor MCM5 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 236986 - 242359 / + |
| NCBI Gene ID | LOC130987557 |
|---|---|
| GeneID | 130987557 |
| locus_tag | - |
| NCBI Name | LOC130987557 |
| 原始查询 | SmilChr06G000015 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA replication licensing factor MCM5 |
| 产物 | DNA replication licensing factor MCM5 |
| Arabidopsis | AT2G07690 (MCM5)Minichromosome maintenance (MCM2/3/5) family protein [Source:NCBI gene (formerly Entrezgene);Acc:815415] identity=78.4; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0797400 (OsMCM5)- identity=76.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0000727 (double-strand break repair via break-induced replication); GO:0003688 (DNA replication origin binding); GO:0003697 (single-stranded DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006270 (DNA replication initiation); GO:0017116 (single-stranded DNA helicase activity); GO:0032508 (GO:0032508); GO:0042555 (MCM complex); GO:0043138 (3'-5' DNA helicase activity) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00493 (MCM); PF01078 (Mg_chelatase); PF14551 (MCM_N); PF17207 (MCM_OB); PF17855 (MCM_lid); PF21933 (MCM5_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987557 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767117.1 |
| 2 | Nucleoplasm | 核质 | 0.80000 | XP_057767117.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057767117.1 |
| 4 | Chromatin | 染色质 | 0.20000 | XP_057767117.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057767117.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:237282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,C61,D2 |
Chr6:238308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr6:238741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr6:238889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,D2 |
Chr6:239737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr6:240029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr6:241892 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B102 |
Chr6:241892 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B102 |
Chr6:241922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:241926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B114,B60,C24,D1 |
Chr6:242071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767117.1PF14551
MCM_N 35-129 aa
PF17207
MCM_OB 140-275 aa
PF00493
MCM 319-541 aa
PF01078
Mg_chelatase 430-500 aa
PF17855
MCM_lid 559-648 aa
PF21933
MCM5_C 673-731 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767117.1 |
Pfam | PF14551 |
MCM_N | Domain | 35 | 129 | 6.2e-12 | 46.5 | MCM N-terminal domain |
XP_057767117.1 |
Pfam | PF17207 |
MCM_OB | Domain | 140 | 275 | 1.1e-34 | 119.6 | MCM OB domain |
XP_057767117.1 |
Pfam | PF00493 |
MCM | Domain | 319 | 541 | 2.2e-102 | 341.7 | MCM P-loop domain |
XP_057767117.1 |
Pfam | PF01078 |
Mg_chelatase | Domain | 430 | 500 | 1.9e-05 | 24.9 | Magnesium chelatase, subunit ChlI |
XP_057767117.1 |
Pfam | PF17855 |
MCM_lid | Domain | 559 | 648 | 3.7e-28 | 98.6 | MCM AAA-lid domain |
XP_057767117.1 |
Pfam | PF21933 |
MCM5_C | Domain | 673 | 731 | 3.8e-18 | 65.8 | MCM5, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。