Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000024`

染色体: Chr06 坐标: 268110-270508 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000024`
名称	SmilChr06G000024
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	268110 - 270508 / `+`

ID 对照

NCBI Gene ID	`LOC130990021`
GeneID	`130990021`
locus_tag	`-`
NCBI Name	`LOC130990021`
原始查询	`SmilChr06G000024`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=34; qcov=0.763; evalue=1.55e-112; confidence=low
Rice	`Os02g0542200` - identity=37; qcov=0.831; evalue=5.05e-157; confidence=medium
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00872 (Transposase_mut); PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:130990021

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770206.1`
2	Chromosome	染色体	0.00000	`XP_057770206.1`
3	Centromere	着丝粒	0.00000	`XP_057770206.1`
4	Chromatin	染色质	0.00000	`XP_057770206.1`
5	Telomere	端粒	0.00000	`XP_057770206.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:269601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B22,B90,C39,C56,C6
`Chr6:269875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr6:270073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr6:270137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr6:270287`	`AG`	`A`	1bp_deletion	frameshift_variant	7	A13,B30,B69,B83,C45,C59,C72
`Chr6:270310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr6:270334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B128,B129,C2,C54
`Chr6:270468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,C15,C32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770206.1

752 aa

376

752

FAR1

ZSWIM1-3_RNaseH-like

MULE

Transposase_mut

SWIM

PF03101 FAR1 26-111 aa PF21056 ZSWIM1-3_RNaseH-like 204-316 aa PF10551 MULE 234-328 aa PF00872 Transposase_mut 237-418 aa PF04434 SWIM 527-545 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770206.1`	Pfam	`PF03101`	FAR1	Domain	26	111	2.7e-19	70.4	FAR1 DNA-binding domain
`XP_057770206.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	204	316	1.3e-10	42.0	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057770206.1`	Pfam	`PF10551`	MULE	Domain	234	328	3e-26	92.3	MULE transposase domain
`XP_057770206.1`	Pfam	`PF00872`	Transposase_mut	Family	237	418	4.2e-05	23.3	Transposase, Mutator family
`XP_057770206.1`	Pfam	`PF04434`	SWIM	Domain	527	545	0.00076	19.7	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914223.1
ATGGATTTTAGTTCAGATTTAGAGTTGAAGCCTAGAATTGGTATGCAATTTGATAGCTTGGATGAGGTTTGGATGTTTTGGGTGCAATATGGAGGGAAATCAGGATTTGGAGTGAGAAAACATTACAGTAACAAGAACAAGAAAACTGGTCATATAACATCATACAAATATGTTTGTTGTAAGGAGGGTATTCGTAAAGCAGACAAAAGAGATTCTTTGGCACTCAATCCTCGACTTGAAACCCGAACAGATTGTAAAGT...

CDS

1 records

下载 CDS FASTA

LOC130990021
ATGGATTTTAGTTCAGATTTAGAGTTGAAGCCTAGAATTGGTATGCAATTTGATAGCTTGGATGAGGTTTGGATGTTTTGGGTGCAATATGGAGGGAAATCAGGATTTGGAGTGAGAAAACATTACAGTAACAAGAACAAGAAAACTGGTCATATAACATCATACAAATATGTTTGTTGTAAGGAGGGTATTCGTAAAGCAGACAAAAGAGATTCTTTGGCACTCAATCCTCGACTTGAAACCCGAACAGATTGTAAAGT...

Protein

1 records

下载 Protein FASTA

XP_057770206.1
MDFSSDLELKPRIGMQFDSLDEVWMFWVQYGGKSGFGVRKHYSNKNKKTGHITSYKYVCCKEGIRKADKRDSLALNPRLETRTDCKVRLGVTYIDGKYKINEFIEEHNHPLHLPETVHMLSSQRKITEIQAHEIDLAEDAGLRQKSAYNLLIRRAGGRDGIGYTMLDAKNYLRSKRQRSMVYGEAGCLMRYFQQKLSENPSFYHANQMDMEEQITNVFWADARMLIDYEYFGDVVSLDTTYCTNRANRPLAIFSGFNHHR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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