Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000047`

染色体: Chr06 坐标: 390521-395271 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000047`
名称	SmilChr06G000047
描述	RNA polymerase II C-terminal domain phosphatase-like 4
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	390521 - 395271 / `-`

ID 对照

NCBI Gene ID	`LOC130987592`
GeneID	`130987592`
locus_tag	`-`
NCBI Name	`LOC130987592`
原始查询	`SmilChr06G000047`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA polymerase II C-terminal domain phosphatase-like 4
产物	RNA polymerase II C-terminal domain phosphatase-like 4
Arabidopsis	`AT5G58003` (CPL4) C-terminal domain phosphatase-like 4 [Source:NCBI gene (formerly Entrezgene);Acc:5008312] identity=52.5; qcov=0.966; evalue=1.28e-155; confidence=high
Rice	`Os05g0390500` - identity=50; qcov=1.01; evalue=6.07e-157; confidence=high
GO	GO:0005634 (nucleus); GO:0008420 (RNA polymerase II CTD heptapeptide repeat phosphatase activity)
KEGG	-
Pfam	PF00533 (BRCT); PF03031 (NIF); PF12738 (PTCB-BRCT)
InterPro	-
eggNOG	-
NR	GeneID:130987592

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767161.1`
2	Nucleoplasm	核质	0.60000	`XP_057767161.1`
3	Cytoplasm	细胞质	0.20000	`XP_057767161.1`
4	Cytosol	细胞质基质	0.20000	`XP_057767161.1`
5	Chromosome	染色体	0.00000	`XP_057767161.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:390907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr6:390950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B80,B98,C26,C60
`Chr6:390963`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:391627`	`G`	`A`	EMS_canonical_SNV	stop_gained	21	B11,B115,B12,B129,B133,B137,B24,B32,B36,B50,B86,C14,C24,C25,C26,C33,C34,C42,C57,C71,C83
`Chr6:391630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr6:391821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B111,B60,C20,D8
`Chr6:392247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B29,B35,C44
`Chr6:392993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,B35
`Chr6:393023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B14,C10,C74
`Chr6:393044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:393090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:393763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B14,C10,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767161.1

464 aa

232

464

NIF

BRCT

PTCB-BRCT

PF03031 NIF 154-300 aa PF00533 BRCT 368-443 aa PF12738 PTCB-BRCT 388-439 aa

XP_057767162.1

464 aa

232

464

NIF

BRCT

PTCB-BRCT

PF03031 NIF 154-300 aa PF00533 BRCT 368-443 aa PF12738 PTCB-BRCT 388-439 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767161.1`	Pfam	`PF03031`	NIF	Family	154	300	1.7e-27	96.8	NLI interacting factor-like phosphatase
`XP_057767161.1`	Pfam	`PF00533`	BRCT	Domain	368	443	7.7e-08	33.1	BRCA1 C Terminus (BRCT) domain
`XP_057767161.1`	Pfam	`PF12738`	PTCB-BRCT	Domain	388	439	4.2e-06	27.4	twin BRCT domain
`XP_057767162.1`	Pfam	`PF03031`	NIF	Family	154	300	1.7e-27	96.8	NLI interacting factor-like phosphatase
`XP_057767162.1`	Pfam	`PF00533`	BRCT	Domain	368	443	7.7e-08	33.1	BRCA1 C Terminus (BRCT) domain
`XP_057767162.1`	Pfam	`PF12738`	PTCB-BRCT	Domain	388	439	4.2e-06	27.4	twin BRCT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009089803.1
GGCTTCGGTCTCATTCAAATTGATTTATTTAACTCTTGAAGAGTGTAGACTGCGGGCCCCTAATTTATGTTAATCCTACAATATTTAAAAAAGAAAAATAGAAAAAAATTGAAAAACCTCTCCCTCTCGCATCCGGCCAATCCCTAGACCGCGCCCGGCGCGTTCCGCAACCGAGCCACCGTACCGCCCGCCCAGCCACCGCGCCGCCCACCGTCCGGGCTACGCTGGCTGAGAAAACCGGGTATTTGCCATAGTTAAAG...

XM_057911178.1
TTTTATACTCCATATTAATTATTAAGAGCTCGTTTCCTACATAATATTGGCTTCGGTCTCATTCAAATTGATTTATTTAACTCTTGAAGAGTGTAGACTGCGGGCCCCTAATTTATGTTAATCCTACAATATTTAAAAAAGAAAAATAGAAAAAAATTGAAAAACCTCTCCCTCTCGCATCCGGCCAATCCCTAGACCGCGCCCGGCGCGTTCCGCAACCGAGCCACCGTACCGCCCGCCCAGCCACCGCGCCGCCCACC...

CDS

2 records

下载 CDS FASTA

LOC130987592
ATGAGTTTAGCAGAGGACTCACCCGTCCACTCTTCAAGCAGCGATGACTTTGCAGCAATTCTTGATGCGGAGCTGGATGCTGCTTCTAATTCTTCAGGCGATTCTGAAGAAGTTGCAGAAGAAGAGGAGAGTAGCGAGGAAGACGATGACAGAAGTGACTATTTGGAGCTTGAGAGAGTTAAAAGGCAGAAGGTGGAGTTAGACCCAGGCATAAGAAATCCACAGAGCTCCTCATCTCAAGGGGCATCGTCGGAAATTAA...

Protein

2 records

下载 Protein FASTA

XP_057767161.1
MSLAEDSPVHSSSSDDFAAILDAELDAASNSSGDSEEVAEEEESSEEDDDRSDYLELERVKRQKVELDPGIRNPQSSSSQGASSEIKVSLPEEEICPHPGFFAGMCMKCGLRVDDDSAVALKYIDKNLRLANDEMARLRDKDFKDLLCHRRKLYLVLDLDHTLLNSSRLIDIKEEESYLNSQRDALPDTLKTSLFRLDRMHMMTKLRPFVHTFLEEASKLFEMYIYTMGERPYALEMADLLDPGNKYFHSRIIAQGDCTQ...

XP_057767162.1
MSLAEDSPVHSSSSDDFAAILDAELDAASNSSGDSEEVAEEEESSEEDDDRSDYLELERVKRQKVELDPGIRNPQSSSSQGASSEIKVSLPEEEICPHPGFFAGMCMKCGLRVDDDSAVALKYIDKNLRLANDEMARLRDKDFKDLLCHRRKLYLVLDLDHTLLNSSRLIDIKEEESYLNSQRDALPDTLKTSLFRLDRMHMMTKLRPFVHTFLEEASKLFEMYIYTMGERPYALEMADLLDPGNKYFHSRIIAQGDCTQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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