Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000054`

染色体: Chr06 坐标: 436813-439893 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000054`
名称	SmilChr06G000054
描述	probable LRR receptor-like serine/threonine-protein kinase At2g24230
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	436813 - 439893 / `+`

ID 对照

NCBI Gene ID	`LOC130987598`
GeneID	`130987598`
locus_tag	`-`
NCBI Name	`LOC130987598`
原始查询	`SmilChr06G000054`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At2g24230
产物	probable LRR receptor-like serine/threonine-protein kinase At2g24230
Arabidopsis	`AT2G24230` (AT2G24230) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816957] identity=64.8; qcov=1; evalue=0; confidence=high
Rice	`Os08g0276400` - identity=55.5; qcov=0.985; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF12799 (LRR_4); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130987598

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057767168.1`
2	Nucleus	细胞核	0.00000	`XP_057767168.1`
3	Chromosome	染色体	0.00000	`XP_057767168.1`
4	Centromere	着丝粒	0.00000	`XP_057767168.1`
5	Chromatin	染色质	0.00000	`XP_057767168.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:437195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B51
`Chr6:437261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,B44
`Chr6:437267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B111,B59,C13,C39
`Chr6:437309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr6:437350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr6:437366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:437627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr6:437661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B40,C27
`Chr6:437917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B23,C80
`Chr6:437934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,B37
`Chr6:438079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr6:438085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767168.1

856 aa

428

856

LRR_8

LRR_6

LRR_1

LRR_8

LRR_1

LRR_4

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF13855 LRR_8 80-125 aa PF13516 LRR_6 90-103 aa PF00560 LRR_1 91-112 aa PF00560 LRR_1 114-136 aa PF13855 LRR_8 114-173 aa PF00560 LRR_1 138-160 aa PF12799 LRR_4 308-348 aa PF00560 LRR_1 332-354 aa PF00560 LRR_1 356-374 aa PF00560 LRR_1 378-396 aa PF00069 Pkinase 551-844 aa PF07714 PK_Tyr_Ser-Thr 551-844 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767168.1`	Pfam	`PF13855`	LRR_8	Repeat	80	125	1.3e-33	115.2	Leucine rich repeat
`XP_057767168.1`	Pfam	`PF13516`	LRR_6	Repeat	90	103	4.9e-10	39.4	Leucine Rich repeat
`XP_057767168.1`	Pfam	`PF00560`	LRR_1	Repeat	91	112	6.2e-34	109.4	Leucine Rich Repeat
`XP_057767168.1`	Pfam	`PF00560`	LRR_1	Repeat	114	136	6.2e-34	109.4	Leucine Rich Repeat
`XP_057767168.1`	Pfam	`PF13855`	LRR_8	Repeat	114	173	1.3e-33	115.2	Leucine rich repeat
`XP_057767168.1`	Pfam	`PF00560`	LRR_1	Repeat	138	160	6.2e-34	109.4	Leucine Rich Repeat
`XP_057767168.1`	Pfam	`PF12799`	LRR_4	Repeat	308	348	1.2e-29	102.4	Leucine Rich repeats (2 copies)
`XP_057767168.1`	Pfam	`PF00560`	LRR_1	Repeat	332	354	6.2e-34	109.4	Leucine Rich Repeat
`XP_057767168.1`	Pfam	`PF00560`	LRR_1	Repeat	356	374	6.2e-34	109.4	Leucine Rich Repeat
`XP_057767168.1`	Pfam	`PF00560`	LRR_1	Repeat	378	396	6.2e-34	109.4	Leucine Rich Repeat
`XP_057767168.1`	Pfam	`PF00069`	Pkinase	Domain	551	844	3.2e-31	109.4	Protein kinase domain
`XP_057767168.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	551	844	2.3e-30	106.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911185.1
TTTTTCTTTCTCATTTAAAAGGTCTCGTTTGCAGCAGAGGGGAAAAACTGGCATTCTAGTGTGTGTTTTGTGTGTGTCACAGACTCAGACAGACCAAAACTTTTCTCGAGTTTGGTTTTCTTTTTTCTTGGCTTCATTAACATGCACAAGTCCACTTAATAGTCCACACCTTGGCTTCTCTCTCCTTCTCTCTCTCTCTCTCTCCAAATTCCAAAAAAAATGTCTCTGGCAATATTATGTGTGTTGGTTGCTGGGGCATA...

CDS

1 records

下载 CDS FASTA

LOC130987598
ATGAAATTTGAGATGGGTTTAGGGTATTATGGTTCTCTTCTGCTTCTTGCATTGCTATTCAGGCCTTTTGTCTGCCAAGAGCCTAACAAAGATGAATCTTTTGTCTTAGAATTCTTTCACAAAATGGGCCAAAATGAAAACTTTTCTGGCTCATCCTGTTCATGGAGAGGAGTAGTTTGTGATGCCCATGGTGAGAATGTTGTGAAATTGGAGGCCTCAGGTTTTGGTTTATCTGGTGCAATCCCAGATTCCACCATTGG...

Protein

1 records

下载 Protein FASTA

XP_057767168.1
MKFEMGLGYYGSLLLLALLFRPFVCQEPNKDESFVLEFFHKMGQNENFSGSSCSWRGVVCDAHGENVVKLEASGFGLSGAIPDSTIGKLMKLESLDLSNNKITALPNDFWDLGSLKNLNLSHNQISGVLPSNIGNFGQLQSLDLSFNNFSGSIPESVSSLLSLQALNLNRNQLESRIPWGILQCQSLVSIDLSANKLNGSLPIGFGAALPQLRFLNLAGNGVLGRDSDFAGMKSIRVLNISGNLFRGSVVGVFVGQLQVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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