Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr06G000063`

Chromosome: Chr06 Coordinates: 514592-517978 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr06G000063`
Name	SmilChr06G000063
Description	1-acyl-sn-glycerol-3-phosphate acyltransferase BAT2, chloroplastic
Chromosome / SeqID	Chr06 / NC_080392.1
Coordinates and Strand	514592 - 517978 / `-`

ID Mapping

NCBI Gene ID	`LOC130987608`
GeneID	`130987608`
locus_tag	`-`
NCBI Name	`LOC130987608`
Original query	`SmilChr06G000063`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	1-acyl-sn-glycerol-3-phosphate acyltransferase BAT2, chloroplastic
Product	1-acyl-sn-glycerol-3-phosphate acyltransferase BAT2%2C chloroplastic
Arabidopsis	`AT4G30580` (ATS2) Phospholipid/glycerol acyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829181] identity=64.5; qcov=0.716; evalue=6.59e-124; confidence=high
Rice	`Os10g0497100` - identity=64.5; qcov=0.738; evalue=1.75e-126; confidence=high
GO	GO:0003841 (1-acylglycerol-3-phosphate O-acyltransferase activity); GO:0006654 (phosphatidic acid biosynthetic process); GO:0016020 (membrane)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01553 (Acyltransferase)
InterPro	-
eggNOG	-
NR	GeneID:130987608

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057767182.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057767182.1`
3	Nucleus	细胞核	0.00000	`XP_057767182.1`
4	Chromosome	染色体	0.00000	`XP_057767182.1`
5	Centromere	着丝粒	0.00000	`XP_057767182.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr6:514763`	`CT`	`C`	1bp_deletion	frameshift_variant	11	B11,B136,B44,B5,B58,B89,C17,C50,C57,C79,D7
`Chr6:514853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:515394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,A24,C19,C49,D4
`Chr6:515503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:515609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:515998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C16
`Chr6:517788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B35,C37,C41,C6

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057767182.1

370 aa

185

370

Acyltransferase

PF01553 Acyltransferase 192-318 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057767182.1`	Pfam	`PF01553`	Acyltransferase	Family	192	318	2.1e-30	105.9	Acyltransferase

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057911199.1
AATTTTCCTATTGTGCGGTGAAGTTTGGAAGTTGCTTTGCTGCAAATCACAACTCTCGAAGCTAATCCCCAAATTGAAAAAGAGAAATTCATCCTCCTCCATTTCCAAGAGAAGATAGATTTGAGAAGATGTGATCATACCCAGCTCCACAAATTAATCTAAGCAAATGGAATTATCTATTCATTTTAGCCGTTCGAGTTTTCACTCTTCTTCGTTTTCGTATTCACACAACCATCCATCTAAGAAGGGTCGATCGGTTT...

CDS

1 records

Download CDS FASTA

LOC130987608
ATGGAATTATCTATTCATTTTAGCCGTTCGAGTTTTCACTCTTCTTCGTTTTCGTATTCACACAACCATCCATCTAAGAAGGGTCGATCGGTTTCCGTTGGGGCTTGCAGTGGAATGTTGGCTTCTCCTCATGGATTCCAGTTTGGCTGCGTTGCACTTAAACGGAAAGCTCAAAGATATTCAGAGACATATGGCCGTCCACACGAAACAATATGTGGTTTAAGGGAAAACAATTATCCTTTCCAGAGATCTTTGTACCA...

Protein

1 records

Download Protein FASTA

XP_057767182.1
MELSIHFSRSSFHSSSFSYSHNHPSKKGRSVSVGACSGMLASPHGFQFGCVALKRKAQRYSETYGRPHETICGLRENNYPFQRSLYHEEELHRTYNGCGRRRRKEVLRDIVVRSELAGTGTAGASYPSSEIWFNSKFRGICFYIVTSLAAITLFMPMVLQHPFVLMFDRYRRKAQYFIAKAWASLTVAPFFKIEYEGLENLPQTDTPAMYVSNHQSFLDIHTLLTLGISFKFISKTSIFLYPIIGWAMFLMGVIPLKRTD...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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