当前解析结果
SmilChr06G000065| 统一新 Gene ID | SmilChr06G000065 |
|---|---|
| 名称 | SmilChr06G000065 |
| 描述 | protein PELPK1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 522648 - 523025 / - |
| NCBI Gene ID | LOC130990024 |
|---|---|
| GeneID | 130990024 |
| locus_tag | - |
| NCBI Name | LOC130990024 |
| 原始查询 | SmilChr06G000065 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein PELPK1-like |
| 产物 | protein PELPK1-like |
| Arabidopsis | AT5G09520 (PELPK2)hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:830811] identity=42.5; qcov=1.11; evalue=1.09e-11; confidence=low |
| Rice | Os07g0599700 (OJ1634_B10.115)- identity=57; qcov=0.632; evalue=2.34e-15; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990024 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.40000 | XP_057770210.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057770210.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057770210.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770210.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770210.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:522744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B104,B32 |
Chr6:522752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr6:522801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr6:522831 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B74 |
Chr6:522831 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B74 |
Chr6:522840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,C40,D11 |
Chr6:522877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr6:522888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C79 |
Chr6:522900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B5,B7,C58,C63 |
Chr6:522967 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B88 |
Chr6:522967 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B88 |
Chr6:522972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B47,C63 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。