当前解析结果
SmilChr06G000080| 统一新 Gene ID | SmilChr06G000080 |
|---|---|
| 名称 | SmilChr06G000080 |
| 描述 | eukaryotic translation initiation factor-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 594188 - 600122 / + |
| NCBI Gene ID | LOC130987624 |
|---|---|
| GeneID | 130987624 |
| locus_tag | - |
| NCBI Name | LOC130987624 |
| 原始查询 | SmilChr06G000080 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | eukaryotic translation initiation factor-like |
| 产物 | eukaryotic translation initiation factor-like |
| Arabidopsis | AT5G57870 (eIFiso4G1)MIF4G domain-containing protein / MA3 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835897] identity=63.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0499300 (Rymv1)- identity=57.7; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0003729 (mRNA binding); GO:0003743 (translation initiation factor activity); GO:0005515 (protein binding); GO:0016281 (eukaryotic translation initiation factor 4F complex) |
| KEGG | - |
| Pfam | PF02847 (MA3); PF02854 (MIF4G) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987624 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057767205.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 1.00000 | XP_057767205.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057767205.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.80000 | XP_057767205.1 |
| 5 | P-body | P-body | 0.60000 | XP_057767205.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:594645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:595981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,A9,B54,B57,B98 |
Chr6:596726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr6:596876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr6:598103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:598519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:598660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,A3,A7,D7 |
Chr6:598695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:599164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,D4 |
Chr6:599170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B126,C51 |
Chr6:599186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr6:599274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,A3,A7,C32,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767205.1PF02854
MIF4G 208-433 aa
PF02847
MA3 614-726 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767205.1 |
Pfam | PF02854 |
MIF4G | Repeat | 208 | 433 | 1.6e-51 | 175.7 | MIF4G domain |
XP_057767205.1 |
Pfam | PF02847 |
MA3 | Repeat | 614 | 726 | 1.4e-25 | 90.2 | MA3 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。