Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000085`

染色体: Chr06 坐标: 617296-622463 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000085`
名称	SmilChr06G000085
描述	mannosyltransferase APTG1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	617296 - 622463 / `-`

ID 对照

NCBI Gene ID	`LOC130987626`
GeneID	`130987626`
locus_tag	`-`
NCBI Name	`LOC130987626`
原始查询	`SmilChr06G000085`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mannosyltransferase APTG1
产物	mannosyltransferase APTG1
Arabidopsis	`AT5G14850` (AT5G14850) Alg9-like mannosyltransferase family [Source:NCBI gene (formerly Entrezgene);Acc:831337] identity=64.7; qcov=0.972; evalue=0; confidence=high
Rice	`Os01g0580100` (P0672C09.18-1) - identity=62.5; qcov=0.914; evalue=0; confidence=high
GO	GO:0000026 (alpha-1,2-mannosyltransferase activity); GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03901 (Glyco_transf_22)
InterPro	-
eggNOG	-
NR	GeneID:130987626

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057767207.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057767207.1`
3	Nucleus	细胞核	0.00000	`XP_057767207.1`
4	Chromosome	染色体	0.00000	`XP_057767207.1`
5	Centromere	着丝粒	0.00000	`XP_057767207.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:619315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr6:619338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:619522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,D7
`Chr6:620349`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr6:620351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B102,B137,B36,B99
`Chr6:620392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,D7
`Chr6:620507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr6:620522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B102,B137,B36,B99
`Chr6:620532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:621344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,B99,C84
`Chr6:621425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,C86
`Chr6:621436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B102,B137,B36,B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767207.1

536 aa

268

536

Glyco_transf_22

PF03901 Glyco_transf_22 40-442 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767207.1`	Pfam	`PF03901`	Glyco_transf_22	Family	40	442	3.1e-115	386.4	Alg9-like mannosyltransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911224.1
AAAGAAAACAAAGGGAAAAAGAAAATCTGAAATTAGCAAATGTTGGGAGTAGGCTAGGCAGCTCAAAATCCCCAATTTGGGCGATCCAATCAATCGGAAAAGGCGAAAATTAAGAAAAATGAAGAAAAGGAAAAACTCTGAAACCGATGATGCGCCCGTTGAAGAAGATGATGACAACAAGAAATCCACCTCCAAAAACCCTGATTTCAAGAGTTTTACACCATCTCTCCCCAAAATATTTGTTTTCTGTTTGATTGCGC...

CDS

1 records

下载 CDS FASTA

LOC130987626
ATGAAGAAAAGGAAAAACTCTGAAACCGATGATGCGCCCGTTGAAGAAGATGATGACAACAAGAAATCCACCTCCAAAAACCCTGATTTCAAGAGTTTTACACCATCTCTCCCCAAAATATTTGTTTTCTGTTTGATTGCGCGCATTATCAATTCCTTGCTCGTGCGGACATACTTCAATCCGGATGAACACTGGCAAGCTCTCGAAATAGCCCATCGAATTGCATTTGGGTATGGGCATCTGACATGGGAATGGGGAAA...

Protein

1 records

下载 Protein FASTA

XP_057767207.1
MKKRKNSETDDAPVEEDDDNKKSTSKNPDFKSFTPSLPKIFVFCLIARIINSLLVRTYFNPDEHWQALEIAHRIAFGYGHLTWEWGKGIRSYLHPVIFAALYKLLAFLHLDSPWFMIRSPRLLQSIFAAFGDLYVYKFSRVLFGGSVAEWALFAQLSNWFLFFCMPRTFSNSLETVLTIVSLYYWPCLRGSVATVPSASRKYALAIAAIACAIRPTSAITWIYVGCLELFSTPSKLKFLLLEVIPIGGIVLGLTFLLDYQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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