Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000087`

染色体: Chr06 坐标: 624053-627539 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000087`
名称	SmilChr06G000087
描述	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	624053 - 627539 / `-`

ID 对照

NCBI Gene ID	`LOC130987631`
GeneID	`130987631`
locus_tag	`-`
NCBI Name	`LOC130987631`
原始查询	`SmilChr06G000087`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
产物	probable alpha%2Calpha-trehalose-phosphate synthase [UDP-forming] 11
Arabidopsis	`AT2G18700` (TPS11) trehalose phosphatase/synthase 11 [Source:NCBI gene (formerly Entrezgene);Acc:816385] identity=67.3; qcov=0.981; evalue=0; confidence=high
Rice	`Os09g0397300` - identity=59.2; qcov=1.01; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005829 (cytosol); GO:0005992 (trehalose biosynthetic process); GO:0070413 (GO:0070413)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00982 (Glyco_transf_20); PF02358 (Trehalose_PPase); PF08282 (Hydrolase_3)
InterPro	-
eggNOG	-
NR	GeneID:130987631

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057767211.1`
2	Cytoplasm	细胞质	0.20000	`XP_057767211.1`
3	Nucleus	细胞核	0.00000	`XP_057767211.1`
4	Chromosome	染色体	0.00000	`XP_057767211.1`
5	Centromere	着丝粒	0.00000	`XP_057767211.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:624342`	`AC`	`A`	1bp_deletion	frameshift_variant	2	B137,C84
`Chr6:624342`	`AC`	`A`	1bp_deletion	CDS_variant	2	B137,C84
`Chr6:624461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,C86,D2
`Chr6:624982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr6:624985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr6:625033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr6:625342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,C55,C84
`Chr6:625787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr6:625799`	`G`	`GC`	1bp_insertion	frameshift_variant	1	A22
`Chr6:625799`	`G`	`GC`	1bp_insertion	CDS_variant	1	A22
`Chr6:625802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B25,B75,D4
`Chr6:625806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767211.1

857 aa

428

857

Glyco_transf_20

Trehalose_PPase

Hydrolase_3

PF00982 Glyco_transf_20 56-541 aa PF02358 Trehalose_PPase 592-825 aa PF08282 Hydrolase_3 721-797 aa

XP_057767212.1

857 aa

428

857

Glyco_transf_20

Trehalose_PPase

Hydrolase_3

PF00982 Glyco_transf_20 56-541 aa PF02358 Trehalose_PPase 592-825 aa PF08282 Hydrolase_3 721-797 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767211.1`	Pfam	`PF00982`	Glyco_transf_20	Family	56	541	1.2e-179	598.7	Glycosyltransferase family 20
`XP_057767211.1`	Pfam	`PF02358`	Trehalose_PPase	Family	592	825	1.2e-82	277.3	Trehalose-phosphatase
`XP_057767211.1`	Pfam	`PF08282`	Hydrolase_3	Domain	721	797	1.6e-09	38.6	haloacid dehalogenase-like hydrolase
`XP_057767212.1`	Pfam	`PF00982`	Glyco_transf_20	Family	56	541	1.2e-179	598.7	Glycosyltransferase family 20
`XP_057767212.1`	Pfam	`PF02358`	Trehalose_PPase	Family	592	825	1.2e-82	277.3	Trehalose-phosphatase
`XP_057767212.1`	Pfam	`PF08282`	Hydrolase_3	Domain	721	797	1.6e-09	38.6	haloacid dehalogenase-like hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911228.1
TATCCTAATTCCTAACTACACCATGCCACCTTCCTTACACAAAATATACACAACAAAATAACATTAAATTAAATTAAATAAATAAAAATAGTCTGCATTTGAAATTTTCAATCCTTAGCCGCATCCAAAACCATAATCTTACGATGTCGCAATTCACGTTTCTGTATCCATGTATGTAACGCACACACAACACACACTCATCGTCTTCAACTGAATCCGACTGTTTCTTTTTTTTTTTTTTCTCTCCAAAACTTTGATTT...

XM_057911229.1
TAATTCCTAACTACACCATGCCACCTTCCTTACACAAAATATACACAACAAAATAACATTAAATTAAATTAAATAAATAAAAATAGTCTGCATTTGAAATTTTCAATCCTTAGCCGCATCCAAAACCATAATCTTACGATGTCGCAATTCACGTTTCTGTATCCATCTTTGTAGGATTTTTGTCATTATGCTGTCGAGATCCTGCTTCAATCTGTTGAATCTCGACGATTTCTCCAGTGATCGCACCCGAATCCCCCGAG...

CDS

2 records

下载 CDS FASTA

LOC130987631
ATGCTGTCGAGATCCTGCTTCAATCTGTTGAATCTCGACGATTTCTCCAGTGATCGCACCCGAATCCCCCGAGTGATCTCGGTGCCCGGAATCATCTCCGATTTCGAGGATGCGAGCAATGCCGAGATCGCGGAATCCGACGGCGTTTCGTCCGCCACTCTAGAGAGGCGGATAGTGGTGGCCAACCAGCTCCCCTTGAAGGCCCACAGAGATTCATCACAGAAATGGCGTTTCGATTGGGACGGCGACGCTCTGGTTTT...

Protein

2 records

下载 Protein FASTA

XP_057767211.1
MLSRSCFNLLNLDDFSSDRTRIPRVISVPGIISDFEDASNAEIAESDGVSSATLERRIVVANQLPLKAHRDSSQKWRFDWDGDALVLQLRDGFPPETDVVFVGCLGVEVDPVEQDEVAQFLLEKFKCVPTFLNSDLINKFYHGFCKHYLWPLFHYMLPMTLNHGVRFDKDTWQAYVSANKVFADRIMEVINPDEDYVWIHDYHLMILPTFLRKRYHRVKLGFFLHSPFPSSEIYRTLPVREEILRALLNCDLIGFHTFDY...

XP_057767212.1
MLSRSCFNLLNLDDFSSDRTRIPRVISVPGIISDFEDASNAEIAESDGVSSATLERRIVVANQLPLKAHRDSSQKWRFDWDGDALVLQLRDGFPPETDVVFVGCLGVEVDPVEQDEVAQFLLEKFKCVPTFLNSDLINKFYHGFCKHYLWPLFHYMLPMTLNHGVRFDKDTWQAYVSANKVFADRIMEVINPDEDYVWIHDYHLMILPTFLRKRYHRVKLGFFLHSPFPSSEIYRTLPVREEILRALLNCDLIGFHTFDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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