Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000092`

染色体: Chr06 坐标: 657941-659394 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000092`
名称	SmilChr06G000092
描述	RING-H2 finger protein ATL13-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	657941 - 659394 / `-`

ID 对照

NCBI Gene ID	`LOC130987637`
GeneID	`130987637`
locus_tag	`-`
NCBI Name	`LOC130987637`
原始查询	`SmilChr06G000092`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING-H2 finger protein ATL13-like
产物	RING-H2 finger protein ATL13-like
Arabidopsis	`AT2G18650` (MEE16) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816380] identity=48.4; qcov=0.854; evalue=1.05e-72; confidence=high
Rice	`Os08g0445000` - identity=47.9; qcov=0.949; evalue=6.19e-79; confidence=high
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:130987637

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.40000	`XP_057767218.1`
2	Cytoplasm	细胞质	0.40000	`XP_057767218.1`
3	Cell membrane	细胞膜	0.20000	`XP_057767218.1`
4	Chromosome	染色体	0.00000	`XP_057767218.1`
5	Centromere	着丝粒	0.00000	`XP_057767218.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:658215`	`T`	`TA`	1bp_insertion	frameshift_variant	4	A6,C22,C55,D6
`Chr6:658215`	`T`	`TA`	1bp_insertion	CDS_variant	4	A6,C22,C55,D6
`Chr6:658217`	`AG`	`A`	1bp_deletion	frameshift_variant	4	A6,C22,C55,D6
`Chr6:658217`	`AG`	`A`	1bp_deletion	CDS_variant	4	A6,C22,C55,D6
`Chr6:658228`	`ACT`	`A`	2bp_deletion	frameshift_variant	57	A25,B101,B105,B12,B121,B125,B126,B132,B133,B18,B2,B21,B22,B3,B31,B42,B43,B47,B48,B50,B52,B56,B59,B62,B63,B67,B72,B77,B8,B80,B83,B85,B87,B89,B90,B92,B96,B97,C25,C32,C33,C41,C46,C51,C53,C54,C58,C60,C61,C68,C72,C80,C83,C85,C87,D5,D9
`Chr6:658267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr6:658285`	`G`	`GCC`	2bp_insertion	frameshift_variant	155	A10,A11,A13,A15,A16,A18,A19,A2,A20,A21,A23,A24,A4,A6,A7,A8,A9,B10,B100,B102,B103,B104,B105,B106,B108,B109,B11,B110,B111,B112,B115,B117,B118,B121,B122,B123,B127,B128,B129,B13,B131,B134,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B23,B25,B26,B28,B29,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B44,B45,B46,B49,B53,B54,B57,B60,B64,B65,B66,B68,B70,B71,B78,B82,B84,B85,B86,B87,B89,B9,B95,B97,B99,C1,C11,C13,C14,C16,C17,C18,C19,C2,C21,C22,C23,C24,C26,C28,C29,C3,C30,C31,C32,C33,C36,C37,C38,C39,C40,C42,C46,C48,C49,C50,C54,C55,C59,C6,C60,C61,C62,C64,C65,C66,C68,C69,C7,C70,C71,C72,C73,C76,C77,C78,C79,C8,C80,C82,C85,C86,C87,C9,D6,D7,D8
`Chr6:658512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B63,C74
`Chr6:658560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr6:658632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,B98,D2,D5
`Chr6:658693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,D4
`Chr6:658819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767218.1

356 aa

178

356

zf-RING_11

zf-RING_2

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

zf-rbx1

PF17123 zf-RING_11 117-146 aa PF13639 zf-RING_2 117-160 aa PF00097 zf-C3HC4 118-159 aa PF13923 zf-C3HC4_2 118-159 aa PF12861 zf-ANAPC11 133-166 aa PF12678 zf-rbx1 134-160 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767218.1`	Pfam	`PF17123`	zf-RING_11	Domain	117	146	1.3e-11	44.7	RING-like zinc finger
`XP_057767218.1`	Pfam	`PF13639`	zf-RING_2	Domain	117	160	3.6e-15	56.7	Ring finger domain
`XP_057767218.1`	Pfam	`PF00097`	zf-C3HC4	Domain	118	159	2.3e-06	28.1	Zinc finger, C3HC4 type (RING finger)
`XP_057767218.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	118	159	4.7e-07	30.2	Zinc finger, C3HC4 type (RING finger)
`XP_057767218.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	133	166	7.4e-06	26.6	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057767218.1`	Pfam	`PF12678`	zf-rbx1	Domain	134	160	2.8e-08	34.6	RING-H2 zinc finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911235.1
GATGAACTTCGTTTCTTCCAAAGTCAACTAGAAAAAAATCCCTCTAAATTACTATTTATTTACTATTGTACATAATTTTCTGAATTTTTAAATTACCATCATTAACTTCTGATTGCAATTTTTTAGGCTAATTATGTCCATTAATAATGGCGCCCAGCTGGTACAAATTCATTGCAGCCAATTCGAATCCCCATCACCTCTCTCTCTCTCTCTCTCTGCTGGGATTATGTAAAAATGGTTTTTGGGTTTCTCTCTCCCTC...

CDS

1 records

下载 CDS FASTA

LOC130987637
ATGGTTTTTGGGTTTCTCTCTCCCTCACAAGCTCCACCCTCTCCACAATCAAGCGCTAATCACGGCTTAAACAACAGAATCAGCCCTAGTATTCTGCTAATCATCATAATCATCGCAGTGATCTTCTTCATCTCCGGAATTCTCCACCTTCTGGTGAGATTCCTGATACGGCCGGCGGCGGCGGCGGCGGCGGCCAGAAACTCCGACGAAATCGAGGATTTGAGCGCGCTTCAAGGGCAGCTGCAGCAGCTCTTCCACCT...

Protein

1 records

下载 Protein FASTA

XP_057767218.1
MVFGFLSPSQAPPSPQSSANHGLNNRISPSILLIIIIIAVIFFISGILHLLVRFLIRPAAAAAAARNSDEIEDLSALQGQLQQLFHLHDSGVDQSFIDALPVFNYKAIIGADKDPFDCAVCLSEFEVEDELRLLPKCSHAFHVDCIDTWLLSHSTCPICRGNILLQDSSRGAASPAAAGALESQDSREIVEERRVDLGVPEIGDRVVEVKLGKFRNVGGGAAADGGAEARRCFSMGSFAYVMKEDSSLRVAIADRVKKRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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