当前解析结果
SmilChr06G000096| 统一新 Gene ID | SmilChr06G000096 |
|---|---|
| 名称 | SmilChr06G000096 |
| 描述 | very-long-chain aldehyde decarbonylase CER3-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 687632 - 692717 / - |
| NCBI Gene ID | LOC130987642 |
|---|---|
| GeneID | 130987642 |
| locus_tag | - |
| NCBI Name | LOC130987642 |
| 原始查询 | SmilChr06G000096 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | very-long-chain aldehyde decarbonylase CER3-like |
| 产物 | very-long-chain aldehyde decarbonylase CER3-like |
| Arabidopsis | AT5G57800 (CER3)Fatty acid hydroxylase superfamily [Source:NCBI gene (formerly Entrezgene);Acc:835889] identity=66; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0178800 (OsGL1-2)- identity=61.8; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0005506 (iron ion binding); GO:0008610 (lipid biosynthetic process); GO:0016491 (oxidoreductase activity) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04116 (FA_hydroxylase); PF12076 (CER1-like_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987642 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057767222.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057767222.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767222.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767222.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767222.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:687900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr6:688019 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C67 |
Chr6:688019 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C67 |
Chr6:689162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B29 |
Chr6:689292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B108,B19,B2,C23 |
Chr6:689704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,B40,C27,C4 |
Chr6:689722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B63,C60 |
Chr6:689902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:690205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,A4 |
Chr6:691253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B87,C26 |
Chr6:691274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,A4,C6 |
Chr6:691719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B22,B58,C34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767222.1PF04116
FA_hydroxylase 137-277 aa
PF12076
CER1-like_C 459-629 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767222.1 |
Pfam | PF04116 |
FA_hydroxylase | Domain | 137 | 277 | 4.7e-17 | 63.4 | Fatty acid hydroxylase |
XP_057767222.1 |
Pfam | PF12076 |
CER1-like_C | Domain | 459 | 629 | 8.6e-69 | 231.2 | CER1-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。