Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000097`

染色体: Chr06 坐标: 700695-703432 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000097`
名称	SmilChr06G000097
描述	WAT1-related protein At4g30420-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	700695 - 703432 / `+`

ID 对照

NCBI Gene ID	`LOC130987645`
GeneID	`130987645`
locus_tag	`-`
NCBI Name	`LOC130987645`
原始查询	`SmilChr06G000097`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At4g30420-like
产物	WAT1-related protein At4g30420-like
Arabidopsis	`AT4G30420` (UMAMIT34) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:829165] identity=44.7; qcov=1.02; evalue=6.22e-88; confidence=medium
Rice	`Os09g0426500` (OsUMAMIT14) - identity=44.1; qcov=1; evalue=3.01e-77; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:130987645

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057767226.1`
2	Vacuole	液泡	0.40000	`XP_057767227.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057767226.1`
4	Nucleus	细胞核	0.00000	`XP_057767226.1`
5	Chromosome	染色体	0.00000	`XP_057767226.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:701245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B68,C87
`Chr6:701256`	`T`	`TG`	1bp_insertion	CDS_variant	1	B115
`Chr6:702058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr6:702521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr6:702602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr6:702607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:702659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,C26,C60,D11
`Chr6:702916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B31,B82,D2,D6
`Chr6:703009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr6:703143`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B136
`Chr6:703143`	`TG`	`T`	1bp_deletion	CDS_variant	1	B136
`Chr6:703277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767226.1

350 aa

175

350

EamA

PF00892 EamA 10-149 aa PF00892 EamA 170-307 aa

XP_057767227.1

306 aa

153

306

EamA

PF00892 EamA 10-149 aa PF00892 EamA 170-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767226.1`	Pfam	`PF00892`	EamA	Domain	10	149	1.2e-22	81.4	EamA-like transporter family
`XP_057767226.1`	Pfam	`PF00892`	EamA	Domain	170	307	1.2e-22	81.4	EamA-like transporter family
`XP_057767227.1`	Pfam	`PF00892`	EamA	Domain	10	149	2.7e-20	73.7	EamA-like transporter family
`XP_057767227.1`	Pfam	`PF00892`	EamA	Domain	170	288	2.7e-20	73.7	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911243.1
TGAATAGTATAGTATATCCTTGCAGAAAGTCACAAAAGTGAACAGCTCAACTCCCTTATCAACATGTCTACACTGATGGAGTATATTTTAAAATAAACTTATGTTTTTGGAGGCATTTAAATTGAAACTTATATATATATAATCCCCTCTACATATATATTTGCAGAGAAGCAAAATTGAAAAACAAAAATGGGATTAATGGAATATTACAAGCCCATAATTGTGATGATAGGATGTCAGTTTCTGTATGCAGGAACAAA...

XM_057911244.1
TGAATAGTATAGTATATCCTTGCAGAAAGTCACAAAAGTGAACAGCTCAACTCCCTTATCAACATGTCTACACTGATGGAGTATATTTTAAAATAAACTTATGTTTTTGGAGGCATTTAAATTGAAACTTATATATATATAATCCCCTCTACATATATATTTGCAGAGAAGCAAAATTGAAAAACAAAAATGGGATTAATGGAATATTACAAGCCCATAATTGTGATGATAGGATGTCAGTTTCTGTATGCAGGAACAAA...

CDS

2 records

下载 CDS FASTA

LOC130987645
ATGGGATTAATGGAATATTACAAGCCCATAATTGTGATGATAGGATGTCAGTTTCTGTATGCAGGAACAAATCTGTTTGTTAGAGCTGCCCTTTTGGAAGAGATGAGTTCAAGTGTCTTTGTTGTTTATAGACAATTTATTGGTTTCTTGCTTATGGCCCCTTTTGCTTATTTTTCAAGGAAAGGAAAAGATGGTTGTCGTTTGAAGTGGAAGAGTTTTTGGTTAATATTTTTGCTCTCTTTTGTGGGTGTGACAGCTAA...

Protein

2 records

下载 Protein FASTA

XP_057767226.1
MGLMEYYKPIIVMIGCQFLYAGTNLFVRAALLEEMSSSVFVVYRQFIGFLLMAPFAYFSRKGKDGCRLKWKSFWLIFLLSFVGVTANHNSYYMGMTLITTSVASAMYNLAPAITFVMAYTMGLEKVVRSWGSIAKIIGTVLCVSGAAVMALLEGPKLLDTKLGDDHTRLIGCLLVFGSSCCWSLALILQARVNEYYPDYVSMTAYMCLMASLQSGIFTVLVEPSTNVWKLTTPMQIFSCLFAGMTSAITFFAQAWCVARR...

XP_057767227.1
MGLMEYYKPIIVMIGCQFLYAGTNLFVRAALLEEMSSSVFVVYRQFIGFLLMAPFAYFSRKGKDGCRLKWKSFWLIFLLSFVGVTANHNSYYMGMTLITTSVASAMYNLAPAITFVMAYTMGLEKVVRSWGSIAKIIGTVLCVSGAAVMALLEGPKLLDTKLGDDHTRLIGCLLVFGSSCCWSLALILQARVNEYYPDYVSMTAYMCLMASLQSGIFTVLVEPSTNVWKLTTPMQIFSCLFAGMTSAITFFAQAWCVARR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器