当前解析结果
SmilChr06G000100| 统一新 Gene ID | SmilChr06G000100 |
|---|---|
| 名称 | SmilChr06G000100 |
| 描述 | WAT1-related protein At4g30420 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 712115 - 714846 / + |
| NCBI Gene ID | LOC130987644 |
|---|---|
| GeneID | 130987644 |
| locus_tag | - |
| NCBI Name | LOC130987644 |
| 原始查询 | SmilChr06G000100 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At4g30420 |
| 产物 | WAT1-related protein At4g30420 |
| Arabidopsis | AT4G30420 (UMAMIT34)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:829165] identity=53; qcov=1.01; evalue=4.33e-134; confidence=high |
| Rice | Os09g0426500 (OsUMAMIT14)- identity=46.6; qcov=1; evalue=1.14e-112; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987644 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057767224.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057767224.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057767224.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767224.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767224.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:712664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B51,C15,C35,C73 |
Chr6:712674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr6:712889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C45 |
Chr6:713081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr6:713097 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B32,C4 |
Chr6:713097 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B32,C4 |
Chr6:713109 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B26 |
Chr6:713109 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B26 |
Chr6:713374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B29,B30,B4,C46,C7 |
Chr6:713464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,B82 |
Chr6:713494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B65,B93,C60,D4 |
Chr6:713495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767224.1PF00892
EamA 9-151 aa
PF00892
EamA 182-319 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767224.1 |
Pfam | PF00892 |
EamA | Domain | 9 | 151 | 1.3e-24 | 87.7 | EamA-like transporter family |
XP_057767224.1 |
Pfam | PF00892 |
EamA | Domain | 182 | 319 | 1.3e-24 | 87.7 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。