Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000109`

染色体: Chr06 坐标: 767355-772532 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000109`
名称	SmilChr06G000109
描述	autophagy-related protein 18b
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	767355 - 772532 / `-`

ID 对照

NCBI Gene ID	`LOC130987655`
GeneID	`130987655`
locus_tag	`-`
NCBI Name	`LOC130987655`
原始查询	`SmilChr06G000109`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	autophagy-related protein 18b
产物	autophagy-related protein 18b
Arabidopsis	`AT4G30510` (ATG18B) autophagy 18 B-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829174] identity=68.8; qcov=0.972; evalue=2.59e-158; confidence=high
Rice	`Os02g0791800` (OsATG18a) - identity=54.8; qcov=0.963; evalue=5.29e-118; confidence=high
GO	GO:0000422 (autophagy of mitochondrion); GO:0005515 (protein binding); GO:0005829 (cytosol); GO:0006497 (protein lipidation); GO:0019898 (extrinsic component of membrane); GO:0032266 (phosphatidylinositol-3-phosphate binding); GO:0034045 (phagophore assembly site membrane); GO:0034497 (protein localization to phagophore assembly site); GO:0044804 (nucleophagy); GO:0080025 (phosphatidylinositol-3,5-bisphosphate binding)
KEGG	smil04136 (Autophagy - other - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF21032 (PROPPIN)
InterPro	-
eggNOG	-
NR	GeneID:130987655

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057767238.1`
2	Nucleus	细胞核	0.00000	`XP_057767238.1`
3	Chromosome	染色体	0.00000	`XP_057767238.1`
4	Centromere	着丝粒	0.00000	`XP_057767238.1`
5	Chromatin	染色质	0.00000	`XP_057767238.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:767810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87
`Chr6:768529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B50,B58,C45,D11
`Chr6:768978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:769000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr6:770362`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B68
`Chr6:770362`	`GA`	`G`	1bp_deletion	CDS_variant	1	B68
`Chr6:771002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B22,C41
`Chr6:771318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B22,C41
`Chr6:771549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B121,B50,B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767238.1

364 aa

182

364

PROPPIN

WD40

PF21032 PROPPIN 11-272 aa PF00400 WD40 174-203 aa

XP_057767239.1

326 aa

163

326

PROPPIN

WD40

PF21032 PROPPIN 8-234 aa PF00400 WD40 136-165 aa

XP_057767240.1

326 aa

163

326

PROPPIN

WD40

PF21032 PROPPIN 8-234 aa PF00400 WD40 136-165 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767238.1`	Pfam	`PF21032`	PROPPIN	Repeat	11	272	2.5e-44	152.6	PROPPIN
`XP_057767238.1`	Pfam	`PF00400`	WD40	Repeat	174	203	4.3e-09	37.2	WD domain, G-beta repeat
`XP_057767239.1`	Pfam	`PF21032`	PROPPIN	Repeat	8	234	2.7e-38	132.8	PROPPIN
`XP_057767239.1`	Pfam	`PF00400`	WD40	Repeat	136	165	4.2e-07	30.9	WD domain, G-beta repeat
`XP_057767240.1`	Pfam	`PF21032`	PROPPIN	Repeat	8	234	2.7e-38	132.8	PROPPIN
`XP_057767240.1`	Pfam	`PF00400`	WD40	Repeat	136	165	4.2e-07	30.9	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057911255.1
ATGAGGGTTCAAACTTGCAACAGAATTTTGCTTGTTATATAATCACAACTCAAGAGAGATGAGATGAGCATGGGTCGGACTGGAGCGGAGTGTATTGGAAGGATTTACAAACGACTTTGGAGAAAAGAGCTGTGAATTTAGTCGGGAATGGCTAATCAATCATCTGCTCATCCGATTCTCTGCGCTTCCTTCAACCAAGACAACAGCTGCTTCGCAATTGGAACCAAAGACGGCTTCAAAATTTTCGACTGTAATACTGG...

XM_057911257.1
TCATCTGCTCATCCGATTCTCTGCGCTTCCTTCAACCAAGACAACAGCTGCTTCGCAATTGGAACCAAAGACGGCTTCAAAATTTTCGACTGTAATACTGGAAGGCTCCTCTATGAACGAGTATGCACCAGACTATGAGTGAATTTTAGCAATGCACACGGCATGCCCTGCTATTGGTGCATTCATCATTGTTGAAATGCTATACAGGACAAGTCTTCTTGCCATTGTTGGGGCTGGTGAACAGCCTTCTTTGTCACCAA...

CDS

3 records

下载 CDS FASTA

LOC130987655
ATGGCTAATCAATCATCTGCTCATCCGATTCTCTGCGCTTCCTTCAACCAAGACAACAGCTGCTTCGCAATTGGAACCAAAGACGGCTTCAAAATTTTCGACTGTAATACTGGAAGGCTCCTCTATGAACGAGCTATTGGTGCATTCATCATTGTTGAAATGCTATACAGGACAAGTCTTCTTGCCATTGTTGGGGCTGGTGAACAGCCTTCTTTGTCACCAAGGAGATTATGTTTGTTCAATACCGTTAATGGAACTTC...

LOC130987655
ATGCACACGGCATGCCCTGCTATTGGTGCATTCATCATTGTTGAAATGCTATACAGGACAAGTCTTCTTGCCATTGTTGGGGCTGGTGAACAGCCTTCTTTGTCACCAAGGAGATTATGTTTGTTCAATACCGTTAATGGAACTTCACTCAGAGAACTCAACTTCTTGACTTCTATTCTTGCTGTTCGTGTAGATAGGAAAAGATTGATAGTTTTGTTTAAAGAGCAAACCTACATCTATGACGTTAATAGCTTGGAAAT...

Protein

3 records

下载 Protein FASTA

XP_057767238.1
MANQSSAHPILCASFNQDNSCFAIGTKDGFKIFDCNTGRLLYERAIGAFIIVEMLYRTSLLAIVGAGEQPSLSPRRLCLFNTVNGTSLRELNFLTSILAVRVDRKRLIVLFKEQTYIYDVNSLEIKQIIDTVPNVQGLCAFSASMDNPYLALPASITKGSVLVYNVVDLQSHCEIDAHRSPLIAMAFSSNGTYIATASEHGTIIRVHLISDATKSYSFRRGTYSSTIFSLSFGPSADLPDILLATSSSGSVHIFSLGFDL...

XP_057767239.1
MHTACPAIGAFIIVEMLYRTSLLAIVGAGEQPSLSPRRLCLFNTVNGTSLRELNFLTSILAVRVDRKRLIVLFKEQTYIYDVNSLEIKQIIDTVPNVQGLCAFSASMDNPYLALPASITKGSVLVYNVVDLQSHCEIDAHRSPLIAMAFSSNGTYIATASEHGTIIRVHLISDATKSYSFRRGTYSSTIFSLSFGPSADLPDILLATSSSGSVHIFSLGFDLNERSKKSSSLLGSIIPGSVSDALDPAHHLVFHHAFAAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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