当前解析结果
SmilChr06G000112| 统一新 Gene ID | SmilChr06G000112 |
|---|---|
| 名称 | SmilChr06G000112 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At4g30520 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 784343 - 788358 / - |
| NCBI Gene ID | LOC130987659 |
|---|---|
| GeneID | 130987659 |
| locus_tag | - |
| NCBI Name | LOC130987659 |
| 原始查询 | SmilChr06G000112 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At4g30520 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At4g30520 |
| Arabidopsis | AT2G23950 (AT2G23950)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816928] identity=65.3; qcov=1.04; evalue=0; confidence=high |
| Rice | Os08g0442700 (COE1)- identity=60.9; qcov=0.982; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987659 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057767249.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057767249.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057767249.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057767249.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057767249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:784526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B127,B17,C15 |
Chr6:784637 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B76 |
Chr6:784637 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B76 |
Chr6:784641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr6:784844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr6:784992 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B136 |
Chr6:784992 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B136 |
Chr6:784994 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B136 |
Chr6:784994 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B136 |
Chr6:784996 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B136 |
Chr6:784996 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B136 |
Chr6:785025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,C10,C3,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767249.1PF08263
LRRNT_2 29-68 aa
PF12799
LRR_4 95-131 aa
PF00560
LRR_1 96-118 aa
PF13855
LRR_8 119-179 aa
PF00560
LRR_1 120-142 aa
PF00560
LRR_1 144-166 aa
PF00069
Pkinase 301-565 aa
PF07714
PK_Tyr_Ser-Thr 302-569 aa
XP_057767250.1PF08263
LRRNT_2 29-68 aa
PF12799
LRR_4 95-131 aa
PF00560
LRR_1 96-118 aa
PF13855
LRR_8 119-170 aa
PF00560
LRR_1 120-142 aa
PF00560
LRR_1 144-166 aa
PF00069
Pkinase 281-545 aa
PF07714
PK_Tyr_Ser-Thr 282-549 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767249.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 29 | 68 | 1.8e-13 | 51.3 | Leucine rich repeat N-terminal domain |
XP_057767249.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 95 | 131 | 2.1e-13 | 50.8 | Leucine Rich repeats (2 copies) |
XP_057767249.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 96 | 118 | 7.6e-13 | 46.6 | Leucine Rich Repeat |
XP_057767249.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 119 | 179 | 9e-12 | 45.3 | Leucine rich repeat |
XP_057767249.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 120 | 142 | 7.6e-13 | 46.6 | Leucine Rich Repeat |
XP_057767249.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 166 | 7.6e-13 | 46.6 | Leucine Rich Repeat |
XP_057767249.1 |
Pfam | PF00069 |
Pkinase | Domain | 301 | 565 | 2.6e-41 | 142.5 | Protein kinase domain |
XP_057767249.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 302 | 569 | 1e-42 | 147.0 | Protein tyrosine and serine/threonine kinase |
XP_057767250.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 29 | 68 | 1.7e-13 | 51.3 | Leucine rich repeat N-terminal domain |
XP_057767250.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 95 | 131 | 2.4e-10 | 41.0 | Leucine Rich repeats (2 copies) |
XP_057767250.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 96 | 118 | 1.9e-10 | 39.5 | Leucine Rich Repeat |
XP_057767250.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 119 | 170 | 6.7e-09 | 36.1 | Leucine rich repeat |
XP_057767250.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 120 | 142 | 1.9e-10 | 39.5 | Leucine Rich Repeat |
XP_057767250.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 166 | 1.9e-10 | 39.5 | Leucine Rich Repeat |
XP_057767250.1 |
Pfam | PF00069 |
Pkinase | Domain | 281 | 545 | 2.4e-41 | 142.6 | Protein kinase domain |
XP_057767250.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 282 | 549 | 9.4e-43 | 147.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。