Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000125`

染色体: Chr06 坐标: 882277-886424 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000125`
名称	SmilChr06G000125
描述	ADP-ribosylation factor 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	882277 - 886424 / `-`

ID 对照

NCBI Gene ID	`LOC130987670`
GeneID	`130987670`
locus_tag	`-`
NCBI Name	`LOC130987670`
原始查询	`SmilChr06G000125`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor 1
产物	ADP-ribosylation factor 1
Arabidopsis	`AT2G24765` (ARF3) ADP-ribosylation factor 3 [Source:NCBI gene (formerly Entrezgene);Acc:817014] identity=91.8; qcov=1; evalue=5.15e-127; confidence=high
Rice	`Os08g0248900` (OsARF3) - identity=94.4; qcov=0.984; evalue=4.14e-127; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport)
KEGG	-
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:130987670

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057767260.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057767260.1`
3	Cytosol	细胞质基质	0.60000	`XP_057767260.1`
4	Vesicle	囊泡	0.60000	`XP_057767260.1`
5	Endosome	内体	0.40000	`XP_057767260.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:882903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B20,B27,C42,C58
`Chr6:883654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B52,B61
`Chr6:884836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,B137,C10
`Chr6:885327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:885805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767260.1

182 aa

182

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 6-176 aa PF09439 SRPRB 16-151 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-130 aa PF00071 Ras 19-170 aa

XP_057767261.1

182 aa

182

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 6-176 aa PF09439 SRPRB 16-151 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-130 aa PF00071 Ras 19-170 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767260.1`	Pfam	`PF00025`	Arf	Domain	6	176	2e-78	262.6	ADP-ribosylation factor family
`XP_057767260.1`	Pfam	`PF09439`	SRPRB	Domain	16	151	1.5e-12	48.0	Signal recognition particle receptor beta subunit
`XP_057767260.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	3.7e-05	24.5	50S ribosome-binding GTPase
`XP_057767260.1`	Pfam	`PF08477`	Roc	Domain	19	129	1.1e-13	52.1	Ras of Complex, Roc, domain of DAPkinase
`XP_057767260.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	130	1.3e-08	35.3	Gtr1/RagA G protein conserved region
`XP_057767260.1`	Pfam	`PF00071`	Ras	Domain	19	170	2.7e-11	44.0	Ras family
`XP_057767261.1`	Pfam	`PF00025`	Arf	Domain	6	176	2e-78	262.6	ADP-ribosylation factor family
`XP_057767261.1`	Pfam	`PF09439`	SRPRB	Domain	16	151	1.5e-12	48.0	Signal recognition particle receptor beta subunit
`XP_057767261.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	3.7e-05	24.5	50S ribosome-binding GTPase
`XP_057767261.1`	Pfam	`PF08477`	Roc	Domain	19	129	1.1e-13	52.1	Ras of Complex, Roc, domain of DAPkinase
`XP_057767261.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	130	1.3e-08	35.3	Gtr1/RagA G protein conserved region
`XP_057767261.1`	Pfam	`PF00071`	Ras	Domain	19	170	2.7e-11	44.0	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911278.1
AAAAAAGGCCCATTTTGCTCTACAAAAAGTAGGCCCATTTATTGCTCGGGTTGGGTAAGCCCAACCCGAGGGAGGCCCATCGTTTTCTGCTAATTTCATTTTCTTCCTCCTCATGATCTACAGTCTCACTCTACAAATCCAGGAACTTTCCCAGATTCCTTATTCCTAACCAAATTTTCTATTATGAAAATCGAATTCAGTTGCTTCCACGCCAATCACGCTCGCGCAGCGCAAGATTGTATCTCGAAATAATTCAGCAA...

XM_057911277.1
CAGTCTCACTCTACAAATCCAGGAACTTTCCCAGATTCCTTATTCCTAACCAAATTTTCTATTATGAAAATCGAATTCAGTTGCTTCCACGCCAATCACGCTCGCGCAGCGCAAGATTGTATCTCGAAATAATTCAGCAATCTCAAATTGATCCCCAAAGCTGTCGTCTTCCTCCGTCGCGGGCCATCCTCTTTCCCGAAGGATTTGAGGGTGCGGGGATTTTCTTCGATCTGATCTAGGTGTTTTCTGCATTCTCTCCC...

CDS

2 records

下载 CDS FASTA

LOC130987670
ATGGGAATAGTGTTTACGCGGCTGTTTTCGTCGCTGTTTGGAAACAAGGAAGCTCGGATCCTGGTTCTCGGCCTTGACAATGCCGGAAAAACCACTATTCTTTATCGACTTCAGATGGGTGAAGTAGTATCTACAATTCCGACAATTGGGTTCAATGTGGAAACAGTGCAGTATAACAACATAAAGTTTCAAGTTTGGGATCTAGGTGGTCAGACAAGTATCAGGCCATACTGGAGATGCTACTTCCCCAACACTCAAGC...

Protein

2 records

下载 Protein FASTA

XP_057767260.1
MGIVFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLLFANKQDLPGALDDAAITEALELHKIKNRQWSIFKTSAIKGEGLFEGLDWLSNTLKSGGG

XP_057767261.1
MGIVFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLLFANKQDLPGALDDAAITEALELHKIKNRQWSIFKTSAIKGEGLFEGLDWLSNTLKSGGG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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