Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000143`

染色体: Chr06 坐标: 1003227-1006484 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000143`
名称	SmilChr06G000143
描述	uncharacterized SmilChr06G000143
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1003227 - 1006484 / `+`

ID 对照

NCBI Gene ID	`LOC130987688`
GeneID	`130987688`
locus_tag	`-`
NCBI Name	`LOC130987688`
原始查询	`SmilChr06G000143`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Syntaxin/t-SNARE family protein [Source:NCBI gene (formerly Entrezgene);Acc:829147]; symbol=AT4G30240; hit=AT4G30240; species=arabidopsis; confidence=high
产物	Syntaxin/t-SNARE family protein [Source:NCBI gene (formerly Entrezgene);Acc:829147]; symbol=AT4G30240; hit=AT4G30240; species=arabidopsis; confidence=high
Arabidopsis	`AT4G30240` (AT4G30240) Syntaxin/t-SNARE family protein [Source:NCBI gene (formerly Entrezgene);Acc:829147] identity=47.5; qcov=0.9; evalue=5.95e-72; confidence=high
Rice	`Os08g0244100` - identity=49.7; qcov=0.479; evalue=1.72e-39; confidence=medium
GO	GO:0016020 (membrane); GO:0048193 (Golgi vesicle transport)
KEGG	-
Pfam	PF09177 (STX6_10_61_N)
InterPro	-
eggNOG	-
NR	GeneID:130987688

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus membrane	核膜	0.40000	`XP_057767281.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057767281.1`
3	Nucleus	细胞核	0.20000	`XP_057767281.1`
4	Cell membrane	细胞膜	0.20000	`XP_057767281.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057767281.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1004383`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B78
`Chr6:1004383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr6:1004662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:1004672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B25,B95,C48
`Chr6:1004673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,C39,C8
`Chr6:1004698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B66,B93,C37,C80,D7
`Chr6:1004779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:1004800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B66,B93,C37,C80,D7
`Chr6:1004869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr6:1004885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr6:1004983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,A6,B27
`Chr6:1005046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767281.1

317 aa

158

317

STX6_10_61_N

PF09177 STX6_10_61_N 13-111 aa

XP_057767282.1

311 aa

156

311

STX6_10_61_N

PF09177 STX6_10_61_N 13-105 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767281.1`	Pfam	`PF09177`	STX6_10_61_N	Domain	13	111	6e-16	59.5	Syntaxin 6/10/61, N-terminal
`XP_057767282.1`	Pfam	`PF09177`	STX6_10_61_N	Domain	13	105	7.2e-20	72.1	Syntaxin 6/10/61, N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911299.1
AAACATAAATATTTGCAGAGGATTGCTTCATAAAAAGATCTGTATTTATTTGCAGCAGTAACAATTTACTGAGATTCTTTCTTACGTCTCTCTCTTCCTTCTGTCGCCTTCTTCCTTTCTCTCTCTTCCTTCTTCGCTTCACCTCGTCAAAGAAAAGAAGGGAAGCGTGGAAACAATCTCCGACATTCTGGGAAGAGACAAACGCAATCAAACAATAATTCGTATCCCCGTATTAAATTCATTTGTTCTGGAGCTGCTGT...

XM_057911298.1
ATTTATTTGCAGCAGTAACAATTTACTGAGATTCTTTCTTACGTCTCTCTCTTCCTTCTGTCGCCTTCTTCCTTTCTCTCTCTTCCTTCTTCGCTTCACCTCGTCAAAGAAAAGAAGGGAAGCGTGGAAACAATCTCCGACATTCTGGGAAGAGACAAACGCAATCAAACAATAATTCGTATCCCCGTATTAAATTCATTTGTTCTGGAGCTGCTGTTGTTTGTTATCTTTCTGTGGGGGAGAGAGAAGCAAGAGAGAGA...

CDS

2 records

下载 CDS FASTA

LOC130987688
ATGTTGGTCGCAAATAGCTTCGATTTATGGCAAAAAGACACCTTCTTTTCTGCAGCTGAGGAGGTCCAGCAATCTGCCGATATAATGGAATCGGCTTATAGGGTATGGCTCAAATCAAGGAAAGAAGGGTTGATATCTCAGCATTTAGATAAGCTTAATAGAGAGCTTCAAATGGCTTTAGGCACTGCAAAATGGCAGGTCAGTTACTTTGATTTGTTGGAAGAGTTTGAAAGAGCTGTTTGTCTAAGCCACAGAAATAA...

LOC130987688
ATGTTGGTCGCAAATAGCTTCGATTTATGGCAAAAAGACACCTTCTTTTCTGCAGCTGAGGAGGTCCAGCAATCTGCCGATATAATGGAATCGGCTTATAGGGTATGGCTCAAATCAAGGAAAGAAGGGTTGATATCTCAGCATTTAGATAAGCTTAATAGAGAGCTTCAAATGGCTTTAGGCACTGCAAAATGGCAGTTGGAAGAGTTTGAAAGAGCTGTTTGTCTAAGCCACAGAAATAATGGTGATGATATTACAGT...

Protein

2 records

下载 Protein FASTA

XP_057767281.1
MLVANSFDLWQKDTFFSAAEEVQQSADIMESAYRVWLKSRKEGLISQHLDKLNRELQMALGTAKWQVSYFDLLEEFERAVCLSHRNNGDDITVTRHREFVSAIEDQISRVETALKDSLEVEGKKPFRWVNLDKEESDDLAHFLSGTPGTSQTIKNGRINVGAPVTSSFCKTSLDEDHIHGSLELQEREVLETEDKISYRADQSPSNLRAWTSPDRHALEIVVDTDDRETDELVEATPKEKCSKPLIWRSRGEIYRRAKEV...

XP_057767282.1
MLVANSFDLWQKDTFFSAAEEVQQSADIMESAYRVWLKSRKEGLISQHLDKLNRELQMALGTAKWQLEEFERAVCLSHRNNGDDITVTRHREFVSAIEDQISRVETALKDSLEVEGKKPFRWVNLDKEESDDLAHFLSGTPGTSQTIKNGRINVGAPVTSSFCKTSLDEDHIHGSLELQEREVLETEDKISYRADQSPSNLRAWTSPDRHALEIVVDTDDRETDELVEATPKEKCSKPLIWRSRGEIYRRAKEVKSQTQV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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