当前解析结果
SmilChr06G000151| 统一新 Gene ID | SmilChr06G000151 |
|---|---|
| 名称 | SmilChr06G000151 |
| 描述 | plasma membrane ATPase 4-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1053337 - 1059142 / - |
| NCBI Gene ID | LOC130987694 |
|---|---|
| GeneID | 130987694 |
| locus_tag | - |
| NCBI Name | LOC130987694 |
| 原始查询 | SmilChr06G000151 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plasma membrane ATPase 4-like |
| 产物 | plasma membrane ATPase 4-like |
| Arabidopsis | AT4G30190 (HA2)H[+]-ATPase 2 [Source:NCBI gene (formerly Entrezgene);Acc:829142] identity=84.9; qcov=0.994; evalue=0; confidence=high |
| Rice | Os04g0656100 (AHA7)- identity=84.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0008553 (P-type proton-exporting transporter activity); GO:0016887 (ATP hydrolysis activity); GO:0051453 (regulation of intracellular pH); GO:0120029 (proton export across plasma membrane) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987694 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057767296.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057767296.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057767296.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767296.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767296.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1053781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr6:1054100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr6:1054103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr6:1054160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr6:1054166 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr6:1054190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,B49,C53 |
Chr6:1054262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,C28 |
Chr6:1054823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:1055210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,B66,B94 |
Chr6:1055225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C60,C74,C86 |
Chr6:1055756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr6:1055789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767296.1PF00690
Cation_ATPase_N 20-83 aa
PF00122
E1-E2_ATPase 133-231 aa
PF00702
Hydrolase 328-604 aa
PF13246
Cation_ATPase 375-495 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767296.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 20 | 83 | 2.1e-12 | 47.2 | Cation transporter/ATPase, N-terminus |
XP_057767296.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 133 | 231 | 3e-32 | 111.2 | P-type ATPase actuator domain |
XP_057767296.1 |
Pfam | PF00702 |
Hydrolase | Domain | 328 | 604 | 2.4e-14 | 54.9 | haloacid dehalogenase-like hydrolase |
XP_057767296.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 375 | 495 | 2.6e-07 | 31.3 | P-type ATPase, cytoplasmic domain N |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。