Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000158`

染色体: Chr06 坐标: 1099097-1106929 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000158`
名称	SmilChr06G000158
描述	villin-4-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1099097 - 1106929 / `-`

ID 对照

NCBI Gene ID	`LOC130987702`
GeneID	`130987702`
locus_tag	`-`
NCBI Name	`LOC130987702`
原始查询	`SmilChr06G000158`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	villin-4-like
产物	villin-4-like
Arabidopsis	`AT4G30160` (VLN4) villin 4 [Source:NCBI gene (formerly Entrezgene);Acc:829139] identity=73.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0659300` (VLN3) - identity=66.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0007010 (cytoskeleton organization); GO:0051014 (actin filament severing); GO:0051015 (actin filament binding)
KEGG	-
Pfam	PF00626 (Gelsolin); PF02209 (VHP)
InterPro	-
eggNOG	-
NR	GeneID:130987702

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057767306.1`
2	Cell projection	细胞突起	1.00000	`XP_057767306.1`
3	Ruffle	Ruffle	0.80000	`XP_057767306.1`
4	Cytosol	细胞质基质	0.60000	`XP_057767306.1`
5	Pseudopodium	Pseudopodium	0.60000	`XP_057767306.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1099662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B64
`Chr6:1099671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C65
`Chr6:1099928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B60,B61
`Chr6:1099950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B127,B16,B25
`Chr6:1100418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:1100433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B44
`Chr6:1100542`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr6:1100994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B28,B35,B84
`Chr6:1101042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,A16,B50
`Chr6:1101059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr6:1101378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B28,B35,B84,C5,D11
`Chr6:1101677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767306.1

962 aa

481

962

Gelsolin

VHP

PF00626 Gelsolin 29-111 aa PF00626 Gelsolin 149-216 aa PF00626 Gelsolin 273-337 aa PF00626 Gelsolin 638-712 aa PF02209 VHP 927-962 aa

XP_057767307.1

962 aa

481

962

Gelsolin

VHP

PF00626 Gelsolin 29-111 aa PF00626 Gelsolin 149-216 aa PF00626 Gelsolin 273-337 aa PF00626 Gelsolin 638-712 aa PF02209 VHP 927-962 aa

XP_057767308.1

962 aa

481

962

Gelsolin

VHP

PF00626 Gelsolin 29-111 aa PF00626 Gelsolin 149-216 aa PF00626 Gelsolin 273-337 aa PF00626 Gelsolin 638-712 aa PF02209 VHP 927-962 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767306.1`	Pfam	`PF00626`	Gelsolin	Domain	29	111	2.3e-59	197.9	Gelsolin repeat
`XP_057767306.1`	Pfam	`PF00626`	Gelsolin	Domain	149	216	2.3e-59	197.9	Gelsolin repeat
`XP_057767306.1`	Pfam	`PF00626`	Gelsolin	Domain	273	337	2.3e-59	197.9	Gelsolin repeat
`XP_057767306.1`	Pfam	`PF00626`	Gelsolin	Domain	638	712	2.3e-59	197.9	Gelsolin repeat
`XP_057767306.1`	Pfam	`PF02209`	VHP	Domain	927	962	9.2e-15	55.0	Villin headpiece domain
`XP_057767307.1`	Pfam	`PF00626`	Gelsolin	Domain	29	111	2.3e-59	197.9	Gelsolin repeat
`XP_057767307.1`	Pfam	`PF00626`	Gelsolin	Domain	149	216	2.3e-59	197.9	Gelsolin repeat
`XP_057767307.1`	Pfam	`PF00626`	Gelsolin	Domain	273	337	2.3e-59	197.9	Gelsolin repeat
`XP_057767307.1`	Pfam	`PF00626`	Gelsolin	Domain	638	712	2.3e-59	197.9	Gelsolin repeat
`XP_057767307.1`	Pfam	`PF02209`	VHP	Domain	927	962	9.2e-15	55.0	Villin headpiece domain
`XP_057767308.1`	Pfam	`PF00626`	Gelsolin	Domain	29	111	2.3e-59	197.9	Gelsolin repeat
`XP_057767308.1`	Pfam	`PF00626`	Gelsolin	Domain	149	216	2.3e-59	197.9	Gelsolin repeat
`XP_057767308.1`	Pfam	`PF00626`	Gelsolin	Domain	273	337	2.3e-59	197.9	Gelsolin repeat
`XP_057767308.1`	Pfam	`PF00626`	Gelsolin	Domain	638	712	2.3e-59	197.9	Gelsolin repeat
`XP_057767308.1`	Pfam	`PF02209`	VHP	Domain	927	962	9.2e-15	55.0	Villin headpiece domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057911324.1
TTTTTTTTTTTTTACCAAGAAGGATTAATTCTTTAATTCTTTTTCTTTCGTCGTAGTTTCAATAATGGTTTAGATGAATCTTTACAGTTCATTGTGTTACTGTATTGCGAAAGGGGGCTTCTTTTTTTAGCTGCTGTTAGTGATAGGCACGCCTGTCAGGCAACTCATCATCATCATTCCCTCCACTTCTCTCCCTCTCTCTCTAACGCCACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTA...

XM_057911323.1
TTAATTCTTTAATTCTTTTTCTTTCGTCGTAGTTTCAATAATGGTTTAGATGAATCTTTACAGTTCATTGTGTTACTGTATTGCGAAAGGGGGCTTCTTTTTTTAGCTGCTGTTAGTGATAGGCACGCCTGTCAGGCAACTCATCATCATCATTCCCTCCACTTCTCTCCCTCTCTCTCTAACGCCACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACATCACAGACCTCGCCGTCTGTCG...

CDS

3 records

下载 CDS FASTA

LOC130987702
ATGGCTGTTTCAATGAAAAACTTAGATCCAGCTTTCCAGGGTGCTGGACAGAAAGCTGGTACTGAGATATGGCGAATTGAAAATTTTCGTCCTGTCCCAGTCCCAAAATCTTCACATGGAAAATTTTGCACTGGAGATTCCTATGTGATTTTGAAGACCACAGCCTTAAAAACTGGTGCCCTACACCACGACATTCATTATTGGCTCGGTAAAAACACCAGTCAGGATGAATCCGGTACTGCAGCGATCAAAACTATCGA...

Protein

3 records

下载 Protein FASTA

XP_057767306.1
MAVSMKNLDPAFQGAGQKAGTEIWRIENFRPVPVPKSSHGKFCTGDSYVILKTTALKTGALHHDIHYWLGKNTSQDESGTAAIKTIELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVAPGFKHAEAEEHQTRLFVCKGKHVVHVKEVPFARSSLNHDDIFILDTKSKIYQFNGSNSCIQERAKALEVVQYIKDTYHDGKCEIAAIDDGKLMADADTGEFWGFFGGFAPLPKKSSTDEPKSTDAVPSKLFRVE...

XP_057767307.1
MAVSMKNLDPAFQGAGQKAGTEIWRIENFRPVPVPKSSHGKFCTGDSYVILKTTALKTGALHHDIHYWLGKNTSQDESGTAAIKTIELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVAPGFKHAEAEEHQTRLFVCKGKHVVHVKEVPFARSSLNHDDIFILDTKSKIYQFNGSNSCIQERAKALEVVQYIKDTYHDGKCEIAAIDDGKLMADADTGEFWGFFGGFAPLPKKSSTDEPKSTDAVPSKLFRVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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