当前解析结果
SmilChr06G000159| 统一新 Gene ID | SmilChr06G000159 |
|---|---|
| 名称 | SmilChr06G000159 |
| 描述 | 5-oxoprolinase 1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1112020 - 1117092 / + |
| NCBI Gene ID | LOC130987704 |
|---|---|
| GeneID | 130987704 |
| locus_tag | - |
| NCBI Name | LOC130987704 |
| 原始查询 | SmilChr06G000159 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 5-oxoprolinase 1 |
| 产物 | 5-oxoprolinase 1 |
| Arabidopsis | AT5G37830 (OXP1)oxoprolinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:833761] identity=81.5; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0966000- identity=79.3; qcov=1; evalue=0; confidence=high |
| GO | GO:0005829 (cytosol); GO:0006749 (glutathione metabolic process); GO:0017168 (5-oxoprolinase (ATP-hydrolyzing) activity) |
| KEGG | smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01968 (Hydantoinase_A); PF02538 (Hydantoinase_B); PF05378 (Hydant_A_N); PF19278 (Hydant_A_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987704 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057767311.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057767311.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057767311.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767311.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767311.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1112646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B104,B66,B78 |
Chr6:1112648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr6:1112650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B132,C16 |
Chr6:1112689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr6:1112737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B40,B66,B78,C20 |
Chr6:1112784 |
GC |
G |
1bp_deletion | frameshift_variant | 5 | B112,C20,C27,C43,C47 |
Chr6:1112784 |
GC |
G |
1bp_deletion | CDS_variant | 5 | B112,C20,C27,C43,C47 |
Chr6:1112829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B130,C27,C43 |
Chr6:1112895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B130,C27,C43 |
Chr6:1112902 |
CA |
C |
1bp_deletion | frameshift_variant | 7 | A19,B112,B130,C20,C27,C43,C47 |
Chr6:1112940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C37,D6 |
Chr6:1112962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767311.1PF05378
Hydant_A_N 10-217 aa
PF01968
Hydantoinase_A 237-536 aa
PF19278
Hydant_A_C 557-715 aa
PF02538
Hydantoinase_B 738-1264 aa
XP_057767312.1PF05378
Hydant_A_N 10-217 aa
PF01968
Hydantoinase_A 237-536 aa
PF19278
Hydant_A_C 557-715 aa
PF02538
Hydantoinase_B 738-1264 aa
XP_057767313.1PF05378
Hydant_A_N 10-217 aa
PF01968
Hydantoinase_A 237-536 aa
PF19278
Hydant_A_C 557-715 aa
PF02538
Hydantoinase_B 738-1264 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767311.1 |
Pfam | PF05378 |
Hydant_A_N | Family | 10 | 217 | 3.3e-61 | 206.8 | Hydantoinase/oxoprolinase N-terminal region |
XP_057767311.1 |
Pfam | PF01968 |
Hydantoinase_A | Family | 237 | 536 | 7.4e-107 | 357.6 | Hydantoinase/oxoprolinase |
XP_057767311.1 |
Pfam | PF19278 |
Hydant_A_C | Domain | 557 | 715 | 1.2e-10 | 41.9 | Hydantoinase/oxoprolinase C-terminal domain |
XP_057767311.1 |
Pfam | PF02538 |
Hydantoinase_B | Family | 738 | 1264 | 6.4e-214 | 711.9 | Hydantoinase B/oxoprolinase |
XP_057767312.1 |
Pfam | PF05378 |
Hydant_A_N | Family | 10 | 217 | 3.3e-61 | 206.8 | Hydantoinase/oxoprolinase N-terminal region |
XP_057767312.1 |
Pfam | PF01968 |
Hydantoinase_A | Family | 237 | 536 | 7.4e-107 | 357.6 | Hydantoinase/oxoprolinase |
XP_057767312.1 |
Pfam | PF19278 |
Hydant_A_C | Domain | 557 | 715 | 1.2e-10 | 41.9 | Hydantoinase/oxoprolinase C-terminal domain |
XP_057767312.1 |
Pfam | PF02538 |
Hydantoinase_B | Family | 738 | 1264 | 6.4e-214 | 711.9 | Hydantoinase B/oxoprolinase |
XP_057767313.1 |
Pfam | PF05378 |
Hydant_A_N | Family | 10 | 217 | 3.3e-61 | 206.8 | Hydantoinase/oxoprolinase N-terminal region |
XP_057767313.1 |
Pfam | PF01968 |
Hydantoinase_A | Family | 237 | 536 | 7.4e-107 | 357.6 | Hydantoinase/oxoprolinase |
XP_057767313.1 |
Pfam | PF19278 |
Hydant_A_C | Domain | 557 | 715 | 1.2e-10 | 41.9 | Hydantoinase/oxoprolinase C-terminal domain |
XP_057767313.1 |
Pfam | PF02538 |
Hydantoinase_B | Family | 738 | 1264 | 6.4e-214 | 711.9 | Hydantoinase B/oxoprolinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。