Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000160

染色体: Chr06 坐标: 1119049-1126183 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000160
名称SmilChr06G000160
描述uncharacterized SmilChr06G000160
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向1119049 - 1126183 / +

ID 对照

NCBI Gene IDLOC130987705
GeneID130987705
locus_tag-
NCBI NameLOC130987705
原始查询SmilChr06G000160

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述CHR729; symbol=CHR729; hit=Os07g0497100; species=rice; confidence=weak
产物CHR729; symbol=CHR729; hit=Os07g0497100; species=rice; confidence=weak
ArabidopsisAT5G44800 (CHR4)
chromatin remodeling 4 [Source:NCBI gene (formerly Entrezgene);Acc:834510]
identity=42.7; qcov=0.114; evalue=1.29e-12; confidence=weak
RiceOs07g0497100 (CHR729)
-
identity=40.9; qcov=0.129; evalue=1.64e-17; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130987705

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057767314.1
2 Nucleoplasm 核质 0.80000 XP_057767318.1
3 Nuclear body 核内小体 0.20000 XP_057767318.1
4 Chromosome 染色体 0.00000 XP_057767314.1
5 Centromere 着丝粒 0.00000 XP_057767314.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:1120796 G A EMS_canonical_SNV CDS_variant 4 A23,B109,B123,C47
Chr6:1121391 C T EMS_canonical_SNV CDS_variant 1 A23
Chr6:1122228 G A EMS_canonical_SNV CDS_variant 3 B1,B44,C41
Chr6:1122468 C T EMS_canonical_SNV CDS_variant 2 B59,C22
Chr6:1122541 G A EMS_canonical_SNV CDS_variant 3 B111,B129,B31
Chr6:1122597 C T EMS_canonical_SNV CDS_variant 1 A23
Chr6:1122738 G A EMS_canonical_SNV CDS_variant 4 A7,B16,C17,C53
Chr6:1123622 C T EMS_canonical_SNV CDS_variant 2 B59,C22
Chr6:1123730 C T EMS_canonical_SNV CDS_variant 3 A7,B49,C87
Chr6:1123766 C T EMS_canonical_SNV CDS_variant 1 C41
Chr6:1123893 G A EMS_canonical_SNV CDS_variant 5 B102,B89,C14,C29,C85
Chr6:1123944 C T EMS_canonical_SNV CDS_variant 2 C43,C72

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057911332.1
ATGCAGCTGCAGCTTCAGTCTTTGGCGATGGTAACCCTATCTCAATTCTCATAGAGAAAACGGCGGGAGAAGTTTTGAAGTTGGTTAAGAGAGAGAGAGAGATAACGAAAGAGATTTTAATGAGACGAAGAAAAAGGGGATTACTTTTGCGGCAGAAGAGGACAGAAAGAGACAGTGGAGTATTAAGGAGTGAGTAGGTACATGGTTTTTTCTGATGGACTCACATGCTCAATTCCCATGGTTCCAATTCCAAACGTTCG...
XM_057911331.1
AGCTGCAGCTTCAGTCTTTGGCGATGGTAACCCTATCTCAATTCTCATAGAGAAAACGGCGGGAGAAGTTTTGAAGTTGGTTAAGAGAGAGAGAGAGATAACGAAAGAGATTTTAATGAGACGAAGAAAAAGGGGATTACTTTTGCGGCAGAAGAGGACAGAAAGAGACAGTGGAGTATTAAGGAGTGAGTAGGTACATGGTTTTTTCTGATGGACTCACATGCTCAATTCCCATGGTTCCAATTCCAAACGTTCGAGAA...

CDS

6 records

下载 CDS FASTA
LOC130987705
ATGGGCAGTAAAGTAGTCGTAACGTACAAGAGGAAGAGGCTGTTCTCGAGAAGTGACCATTCTCTTTTAAATTTACACACTAATACATCTTGCGAGAGTGCAAAGTCAAAGACATCGGATAATTTCCCCAACAACACAGGATTTGGGAGTCATGCATATTCCAAAGACACTGGCGGGGAAGATGTGCTGCAATGTGAAAATCGTGATTCCCATTGTTGCAGTCAATGGTCAGAGAAGCAAGCTAGGAAACTGGATATGCT...
LOC130987705
ATGGGCAGTAAAGTAGTCGTAACGTACAAGAGGAAGAGGCTGTTCTCGAGAAGTGACCATTCTCTTTTAAATTTACACACTAATACATCTTGCGAGAGTGCAAAGTCAAAGACATCGGATAATTTCCCCAACAACACAGGATTTGGGAGTCATGCATATTCCAAAGACACTGGCGGGGAAGATGTGCTGCAATGTGAAAATCGTGATTCCCATTGTTGCAGTCAATGGTCAGAGAAGCAAGCTAGGAAACTGGATATGCT...

Protein

6 records

下载 Protein FASTA
XP_057767314.1
MGSKVVVTYKRKRLFSRSDHSLLNLHTNTSCESAKSKTSDNFPNNTGFGSHAYSKDTGGEDVLQCENRDSHCCSQWSEKQARKLDMLPSECTEQKDSPVSVETQKHTSEKNCSPNADAKQIICHPNLNKTPEVRYDIDSSGRSNAVKSGEEFEDCKKILTVSQLPDACSGAEPDPICLKTSAGINHSCQMKGTCTHEASTLAETDKFNTDQYSSLCNNSGMKRKLSSSLITFCRRSKRNTADIAAKSAILPAASCLVDLK...
XP_057767315.1
MGSKVVVTYKRKRLFSRSDHSLLNLHTNTSCESAKSKTSDNFPNNTGFGSHAYSKDTGGEDVLQCENRDSHCCSQWSEKQARKLDMLPSECTEQKDSPVSVETQKHTSEKNCSPNADAKQIICHPNLNKTPEVRYDIDSSGRSNAVKSGEEFEDCKKILTVSQLPDACSGAEPDPICLKTSAGINHSCQMKGTCTHEASTLAETDKFNTDQYSSLCNNSGMKRKLSSSLITFCRRSKRNTADIAAKSAILPAASCLVDLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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