当前解析结果
SmilChr06G000166| 统一新 Gene ID | SmilChr06G000166 |
|---|---|
| 名称 | SmilChr06G000166 |
| 描述 | zinc finger protein VAR3, chloroplastic-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1149227 - 1153867 / + |
| NCBI Gene ID | LOC130987712 |
|---|---|
| GeneID | 130987712 |
| locus_tag | - |
| NCBI Name | LOC130987712 |
| 原始查询 | SmilChr06G000166 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein VAR3, chloroplastic-like |
| 产物 | zinc finger protein VAR3%2C chloroplastic-like |
| Arabidopsis | AT5G17790 (VAR3)zinc finger (Ran-binding) family protein [Source:NCBI gene (formerly Entrezgene);Acc:831647] identity=38.3; qcov=0.461; evalue=4.39e-65; confidence=medium |
| Rice | Os01g0815700- identity=45.3; qcov=0.33; evalue=1.59e-64; confidence=low |
| GO | GO:0003729 (mRNA binding); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00641 (Zn_ribbon_RanBP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987712 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057767325.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057767329.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057767325.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767325.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767325.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1149519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B105 |
Chr6:1149537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B99,C1,C5 |
Chr6:1149543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr6:1149675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr6:1149716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B12,B3,C2,C63 |
Chr6:1149717 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr6:1149733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B44 |
Chr6:1149751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B51 |
Chr6:1149917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B99,C1,C5,C73 |
Chr6:1149980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B105 |
Chr6:1150350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B114,C79 |
Chr6:1150351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B10,B114,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767325.1PF00641
Zn_ribbon_RanBP 268-295 aa
PF00641
Zn_ribbon_RanBP 302-328 aa
XP_057767326.1PF00641
Zn_ribbon_RanBP 268-295 aa
PF00641
Zn_ribbon_RanBP 302-328 aa
XP_057767328.1PF00641
Zn_ribbon_RanBP 268-295 aa
PF00641
Zn_ribbon_RanBP 302-328 aa
XP_057767329.1PF00641
Zn_ribbon_RanBP 268-295 aa
PF00641
Zn_ribbon_RanBP 302-328 aa
XP_057767330.1PF00641
Zn_ribbon_RanBP 268-295 aa
PF00641
Zn_ribbon_RanBP 302-328 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767325.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 268 | 295 | 3e-14 | 52.7 | Zn-finger in Ran binding protein and others |
XP_057767325.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 302 | 328 | 3e-14 | 52.7 | Zn-finger in Ran binding protein and others |
XP_057767326.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 268 | 295 | 3e-14 | 52.7 | Zn-finger in Ran binding protein and others |
XP_057767326.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 302 | 328 | 3e-14 | 52.7 | Zn-finger in Ran binding protein and others |
XP_057767328.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 268 | 295 | 3e-14 | 52.7 | Zn-finger in Ran binding protein and others |
XP_057767328.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 302 | 328 | 3e-14 | 52.7 | Zn-finger in Ran binding protein and others |
XP_057767329.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 268 | 295 | 2.8e-14 | 52.8 | Zn-finger in Ran binding protein and others |
XP_057767329.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 302 | 328 | 2.8e-14 | 52.8 | Zn-finger in Ran binding protein and others |
XP_057767330.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 268 | 295 | 2.8e-14 | 52.8 | Zn-finger in Ran binding protein and others |
XP_057767330.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 302 | 328 | 2.8e-14 | 52.8 | Zn-finger in Ran binding protein and others |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。