当前解析结果
SmilChr06G000167| 统一新 Gene ID | SmilChr06G000167 |
|---|---|
| 名称 | SmilChr06G000167 |
| 描述 | probable lysophospholipase BODYGUARD 4 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1152679 - 1155355 / - |
| NCBI Gene ID | LOC130987713 |
|---|---|
| GeneID | 130987713 |
| locus_tag | - |
| NCBI Name | LOC130987713 |
| 原始查询 | SmilChr06G000167 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable lysophospholipase BODYGUARD 4 |
| 产物 | probable lysophospholipase BODYGUARD 4 |
| Arabidopsis | AT5G17780 (AT5G17780)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831646] identity=49.3; qcov=0.979; evalue=3.97e-141; confidence=high |
| Rice | Os07g0685500 (OJ1200_C08.102)- identity=45.9; qcov=0.974; evalue=1.22e-126; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF06821 (Ser_hydrolase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987713 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057767331.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057767331.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767331.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767331.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767331.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1152757 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B78,D10 |
Chr6:1152895 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B101 |
Chr6:1152895 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B101 |
Chr6:1152909 |
GAC |
G |
2bp_deletion | frameshift_variant | 2 | C82,D7 |
Chr6:1152909 |
GAC |
G |
2bp_deletion | CDS_variant | 2 | C82,D7 |
Chr6:1152966 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:1153012 |
TGA |
T |
2bp_deletion | frameshift_variant | 5 | A7,B104,B62,B80,C53 |
Chr6:1153012 |
TGA |
T |
2bp_deletion | CDS_variant | 5 | A7,B104,B62,B80,C53 |
Chr6:1153021 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B137,B88,C18,C9 |
Chr6:1153232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr6:1153243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B13,B35,B69,C23 |
Chr6:1153330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767331.1PF12146
Hydrolase_4 148-402 aa
PF00561
Abhydrolase_1 150-403 aa
PF12697
Abhydrolase_6 150-412 aa
PF06821
Ser_hydrolase 223-271 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767331.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 148 | 402 | 1.8e-11 | 44.5 | Serine aminopeptidase, S33 |
XP_057767331.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 150 | 403 | 1.8e-24 | 87.5 | alpha/beta hydrolase fold |
XP_057767331.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 150 | 412 | 3e-19 | 71.2 | Alpha/beta hydrolase family |
XP_057767331.1 |
Pfam | PF06821 |
Ser_hydrolase | Domain | 223 | 271 | 7.3e-06 | 26.7 | Serine hydrolase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。