当前解析结果
SmilChr06G000173| 统一新 Gene ID | SmilChr06G000173 |
|---|---|
| 名称 | SmilChr06G000173 |
| 描述 | multiple C2 domain and transmembrane region protein 14 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1197995 - 1201344 / + |
| NCBI Gene ID | LOC130987720 |
|---|---|
| GeneID | 130987720 |
| locus_tag | - |
| NCBI Name | LOC130987720 |
| 原始查询 | SmilChr06G000173 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | multiple C2 domain and transmembrane region protein 14 |
| 产物 | multiple C2 domain and transmembrane region protein 14 |
| Arabidopsis | AT3G03680 (AT3G03680)C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821190] identity=68.4; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0683800- identity=44.2; qcov=1.04; evalue=0; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00168 (C2); PF08372 (PRT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987720 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057767349.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057767349.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057767349.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057767349.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057767349.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1198294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B76,C6 |
Chr6:1198363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr6:1198381 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A14 |
Chr6:1198381 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A14 |
Chr6:1198433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr6:1198581 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,C65 |
Chr6:1198626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,C65 |
Chr6:1198665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,B26 |
Chr6:1198690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr6:1198704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr6:1198740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr6:1198813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767349.1PF00168
C2 8-100 aa
PF00168
C2 270-373 aa
PF00168
C2 424-535 aa
PF00168
C2 584-698 aa
PF08372
PRT_C 843-998 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767349.1 |
Pfam | PF00168 |
C2 | Domain | 8 | 100 | 3.1e-60 | 201.6 | C2 domain |
XP_057767349.1 |
Pfam | PF00168 |
C2 | Domain | 270 | 373 | 3.1e-60 | 201.6 | C2 domain |
XP_057767349.1 |
Pfam | PF00168 |
C2 | Domain | 424 | 535 | 3.1e-60 | 201.6 | C2 domain |
XP_057767349.1 |
Pfam | PF00168 |
C2 | Domain | 584 | 698 | 3.1e-60 | 201.6 | C2 domain |
XP_057767349.1 |
Pfam | PF08372 |
PRT_C | Family | 843 | 998 | 1.4e-67 | 227.1 | Plant phosphoribosyltransferase C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。