Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000192`

染色体: Chr06 坐标: 1326955-1330334 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000192`
名称	SmilChr06G000192
描述	protein DETOXIFICATION 21-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1326955 - 1330334 / `-`

ID 对照

NCBI Gene ID	`LOC130987740`
GeneID	`130987740`
locus_tag	`-`
NCBI Name	`LOC130987740`
原始查询	`SmilChr06G000192`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 21-like
产物	protein DETOXIFICATION 21-like
Arabidopsis	`AT1G33110` (AT1G33110) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:840207] identity=54; qcov=0.964; evalue=0; confidence=high
Rice	`Os12g0126000` - identity=55; qcov=0.968; evalue=7.93e-178; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:130987740

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057767372.1`
2	Vacuole membrane	液泡膜	0.60000	`XP_057767372.1`
3	Vacuole	液泡	0.40000	`XP_057767372.1`
4	Nucleus	细胞核	0.00000	`XP_057767372.1`
5	Chromosome	染色体	0.00000	`XP_057767372.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1327147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B32
`Chr6:1327352`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B23,B44
`Chr6:1327352`	`TC`	`T`	1bp_deletion	CDS_variant	2	B23,B44
`Chr6:1327885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B40
`Chr6:1327958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr6:1327964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr6:1327984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87
`Chr6:1328010`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	C5,C79,C81,D9
`Chr6:1328010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C5,C79,C81,D9
`Chr6:1328047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,C86
`Chr6:1328092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,B40
`Chr6:1328094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767372.1

473 aa

236

473

MatE

PF01554 MatE 37-197 aa PF01554 MatE 258-420 aa

XP_057767373.1

473 aa

236

473

MatE

PF01554 MatE 37-197 aa PF01554 MatE 258-420 aa

XP_057767374.1

473 aa

236

473

MatE

PF01554 MatE 37-197 aa PF01554 MatE 258-420 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767372.1`	Pfam	`PF01554`	MatE	Family	37	197	3.9e-51	173.7	MatE
`XP_057767372.1`	Pfam	`PF01554`	MatE	Family	258	420	3.9e-51	173.7	MatE
`XP_057767373.1`	Pfam	`PF01554`	MatE	Family	37	197	3.9e-51	173.7	MatE
`XP_057767373.1`	Pfam	`PF01554`	MatE	Family	258	420	3.9e-51	173.7	MatE
`XP_057767374.1`	Pfam	`PF01554`	MatE	Family	37	197	3.9e-51	173.7	MatE
`XP_057767374.1`	Pfam	`PF01554`	MatE	Family	258	420	3.9e-51	173.7	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057911391.1
GGGATTTACAAAATTAAAACAAATCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAACCATTTCCTATATTAGCTTGCAACAGCAAAAGCCAGAAAAGAAGAAAAAGAAGAGAATACAGATTTCACTGGTCATAAATGGAGCCTGAGATGAAGGAGAAGCTGCTGCAGGTAGCCGAAAACAACGAAGAAAATCTCAAGAAAAAGATATGGAATGAGACCAAGAAAATGTGGATCATTGCTGGCCCTG...

XM_057911389.1
TCTGAATGAGCTGTTGTTGTTTTTTTTTTTGTTGAATTACTGTTGCTTAATTTGTTAATTGCACATTAATTTCAAAACATTTTCCAAGAACTGGAGAATTATTAAATATTGATTTCCTACACATCACTGCCGTCCATTAACATGCTCTGTTTGGCATTGTGCATAATTTGCCGTATGCAGCAAATACACACTTACAAACTTACAAAACCTGCTCTATTTCTTTCTTCTTCTTCTTCTTTTTTCTACTTTTTTTGGCATTA...

CDS

3 records

下载 CDS FASTA

LOC130987740
ATGGAGCCTGAGATGAAGGAGAAGCTGCTGCAGGTAGCCGAAAACAACGAAGAAAATCTCAAGAAAAAGATATGGAATGAGACCAAGAAAATGTGGATCATTGCTGGCCCTGCCATCTTGATCAGATTCTCAACTTTTGGGATAAATGTTGTGAGCCAAGCTTTTGTGGGCCACATTGGCGCCACGGAGCTTGCTGCGTACGCGCTCGTCTACACCGTGCTGCTGAGATTCTCCAACGGCATACTGATCGGCATGAATAG...

Protein

3 records

下载 Protein FASTA

XP_057767372.1
MEPEMKEKLLQVAENNEENLKKKIWNETKKMWIIAGPAILIRFSTFGINVVSQAFVGHIGATELAAYALVYTVLLRFSNGILIGMNSGFGTLHGQAYGAKQYQNLGMYLQQGWIVLPTVAAILCPLLVFAAPILKALGQDELVAETAGVVALWFIPLTFSFAVLCASNMFLQSQSKIVVLSCLSTLSLLLHIFISWLLTVRFEFGMTGAMVSTTLAYWIPNVGQIIYIFCGGCRETWGGFTALAFKDLGHTIKIAASSCL...

XP_057767373.1
MEPEMKEKLLQVAENNEENLKKKIWNETKKMWIIAGPAILIRFSTFGINVVSQAFVGHIGATELAAYALVYTVLLRFSNGILIGMNSGFGTLHGQAYGAKQYQNLGMYLQQGWIVLPTVAAILCPLLVFAAPILKALGQDELVAETAGVVALWFIPLTFSFAVLCASNMFLQSQSKIVVLSCLSTLSLLLHIFISWLLTVRFEFGMTGAMVSTTLAYWIPNVGQIIYIFCGGCRETWGGFTALAFKDLGHTIKIAASSCL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器