Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000208`

染色体: Chr06 坐标: 1408931-1412477 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000208`
名称	SmilChr06G000208
描述	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1408931 - 1412477 / `-`

ID 对照

NCBI Gene ID	`LOC130987756`
GeneID	`130987756`
locus_tag	`-`
NCBI Name	`LOC130987756`
原始查询	`SmilChr06G000208`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like
产物	histone-lysine N-methyltransferase%2C H3 lysine-9 specific SUVH1-like
Arabidopsis	`AT1G73100` (SUVH3) histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein [Source:NCBI gene (formerly Entrezgene);Acc:843641] identity=47.3; qcov=1.03; evalue=0; confidence=high
Rice	`Os05g0490700` (OsSET22) - identity=44.6; qcov=1.01; evalue=0; confidence=medium
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0008270 (zinc ion binding); GO:0034968 (GO:0034968); GO:0042054 (histone methyltransferase activity)
KEGG	smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00856 (SET); PF02182 (SAD_SRA); PF05033 (Pre-SET)
InterPro	-
eggNOG	-
NR	GeneID:130987756

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767393.1`
2	Chromosome	染色体	0.00000	`XP_057767393.1`
3	Centromere	着丝粒	0.00000	`XP_057767393.1`
4	Chromatin	染色质	0.00000	`XP_057767393.1`
5	Telomere	端粒	0.00000	`XP_057767393.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1409633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:1409684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,D10
`Chr6:1409719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B28,B54,C12
`Chr6:1409952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:1410025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B104,B80,C6,C9
`Chr6:1410092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr6:1410269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B134,B14,B25,C63
`Chr6:1410287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr6:1410334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B104,B80,C9,D11
`Chr6:1410436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr6:1410532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B26,B45
`Chr6:1410535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767393.1

717 aa

358

717

SAD_SRA

Pre-SET

SET

PF02182 SAD_SRA 270-424 aa PF05033 Pre-SET 454-551 aa PF00856 SET 570-693 aa

XP_057767394.1

717 aa

358

717

SAD_SRA

Pre-SET

SET

PF02182 SAD_SRA 270-424 aa PF05033 Pre-SET 454-551 aa PF00856 SET 570-693 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767393.1`	Pfam	`PF02182`	SAD_SRA	Domain	270	424	5.2e-53	179.5	SAD/SRA domain
`XP_057767393.1`	Pfam	`PF05033`	Pre-SET	Family	454	551	5.4e-19	69.4	Pre-SET motif
`XP_057767393.1`	Pfam	`PF00856`	SET	Family	570	693	1.5e-18	67.9	SET domain
`XP_057767394.1`	Pfam	`PF02182`	SAD_SRA	Domain	270	424	5.2e-53	179.5	SAD/SRA domain
`XP_057767394.1`	Pfam	`PF05033`	Pre-SET	Family	454	551	5.4e-19	69.4	Pre-SET motif
`XP_057767394.1`	Pfam	`PF00856`	SET	Family	570	693	1.5e-18	67.9	SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911411.1
ACAGACACTGACCCGCAAAACGCATTCATCACTTTCTAAATAGAAAAAGGGAAAATAGAAAAACACACTGAAAAAAAGTTACTCTCCATCTCTGAGGACGCCGGCCCTTGCTGTAGTGAATTTCTGTAGTGATGGAGCAAGGTTTGAACTCTGATCCAAATGCCCCTCCTGGGCCAATTGATAAGTCCAGAGTGTATGATGTGAAGCCTTTAAGAAGCCTGGTCCCAGTTTTCCCGAACCCCCCGGGCATGTCTTCTGTT...

XM_057911410.1
CTGACCCGCAAAACGCATTCATCACTTTCTAAATAGAAAAAGGGAAAATAGAAAAACACACTGAAAAAAAGTTACTCTCCATCTCTGAGGTAATTTCTCCCTTTCAAGATCTCTTCCTTGTTTGTTTTTTAACCGAAGAATCTGATCTAGGGTTTGGTTAAAACACATCAAAATCGTTTTATTTTTTCGAATCGGAAGTGTTCTTTCGCACTTCAATTTTTCTTTTCTTTTTCTTTTCTTCTGTAAGTTTTTGTTCCATT...

CDS

2 records

下载 CDS FASTA

LOC130987756
ATGGAGCAAGGTTTGAACTCTGATCCAAATGCCCCTCCTGGGCCAATTGATAAGTCCAGAGTGTATGATGTGAAGCCTTTAAGAAGCCTGGTCCCAGTTTTCCCGAACCCCCCGGGCATGTCTTCTGTTTCAACCCCGAATCCGTCTCCTTTTGTGTGTGTTCCACCTTCTGGCCCTTTCCCGGCTGGAGTCCAACCATTTTACCCGTTTATGGTTTCAAAAGATTCTCAGCCCACCCCAACTGGTGGTGTTGCTCGAAA...

Protein

2 records

下载 Protein FASTA

XP_057767393.1
MEQGLNSDPNAPPGPIDKSRVYDVKPLRSLVPVFPNPPGMSSVSTPNPSPFVCVPPSGPFPAGVQPFYPFMVSKDSQPTPTGGVARNQTGFDSSIPAPVPLNSFRTPTPQANGESSRAKRASKTRGSASIVIEDDGYSDSHNQSDQYMSGFSMHAADADDASNSGKRTRGRPKRRAAGNGTGNGVGIVELESLADSIFTLFKVKEMDDFRRSSGDKDTTATVLLVYDLIRRRLTQLEEARDNAPGVARRPDLKASNLMMT...

XP_057767394.1
MEQGLNSDPNAPPGPIDKSRVYDVKPLRSLVPVFPNPPGMSSVSTPNPSPFVCVPPSGPFPAGVQPFYPFMVSKDSQPTPTGGVARNQTGFDSSIPAPVPLNSFRTPTPQANGESSRAKRASKTRGSASIVIEDDGYSDSHNQSDQYMSGFSMHAADADDASNSGKRTRGRPKRRAAGNGTGNGVGIVELESLADSIFTLFKVKEMDDFRRSSGDKDTTATVLLVYDLIRRRLTQLEEARDNAPGVARRPDLKASNLMMT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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