Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000218`

染色体: Chr06 坐标: 1458526-1461532 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000218`
名称	SmilChr06G000218
描述	uncharacterized SmilChr06G000218
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1458526 - 1461532 / `-`

ID 对照

NCBI Gene ID	`LOC130987764`
GeneID	`130987764`
locus_tag	`-`
NCBI Name	`LOC130987764`
原始查询	`SmilChr06G000218`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Galactose mutarotase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820642]; symbol=AT3G17940; hit=AT3G17940; species=arabidopsis; confidence=high
产物	Galactose mutarotase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820642]; symbol=AT3G17940; hit=AT3G17940; species=arabidopsis; confidence=high
Arabidopsis	`AT3G17940` (AT3G17940) Galactose mutarotase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820642] identity=78; qcov=0.988; evalue=0; confidence=high
Rice	`Os10g0155500` - identity=75.7; qcov=0.994; evalue=0; confidence=high
GO	GO:0004034 (aldose 1-epimerase activity); GO:0006006 (glucose metabolic process); GO:0030246 (carbohydrate binding); GO:0033499 (beta-D-galactose catabolic process via UDP-galactose, Leloir pathway)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01263 (Aldose_epim)
InterPro	-
eggNOG	-
NR	GeneID:130987764

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057767407.1`
2	Cytoplasm	细胞质	0.80000	`XP_057767407.1`
3	Mitochondrion	线粒体	0.40000	`XP_057767408.1`
4	Nucleus	细胞核	0.00000	`XP_057767407.1`
5	Chromosome	染色体	0.00000	`XP_057767407.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1458706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,C75
`Chr6:1458770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr6:1459068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B69,C19
`Chr6:1459166`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B68
`Chr6:1459166`	`AC`	`A`	1bp_deletion	CDS_variant	1	B68
`Chr6:1459241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr6:1459275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B131
`Chr6:1459278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B52,C75,D2
`Chr6:1459280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr6:1459331`	`GAA`	`G`	2bp_deletion	frameshift_variant	153	A1,A10,A11,A15,A16,A2,A20,A21,A23,A24,A4,A7,A8,A9,B1,B10,B101,B102,B103,B107,B112,B113,B114,B117,B118,B119,B12,B124,B125,B127,B128,B129,B130,B131,B132,B133,B136,B137,B139,B14,B140,B15,B19,B20,B21,B22,B24,B25,B27,B28,B3,B32,B33,B35,B37,B38,B39,B41,B42,B43,B44,B45,B46,B49,B5,B50,B51,B54,B55,B57,B59,B6,B62,B68,B69,B7,B70,B73,B74,B75,B76,B77,B79,B80,B82,B85,B86,B87,B88,B89,B90,B91,B92,B93,B95,B98,B99,C1,C12,C14,C16,C18,C19,C2,C20,C21,C23,C24,C26,C27,C28,C29,C3,C31,C32,C34,C36,C37,C4,C42,C44,C47,C48,C49,C51,C52,C53,C54,C55,C57,C58,C6,C60,C63,C67,C68,C7,C76,C77,C78,C79,C80,C81,C83,C84,C86,C87,D11,D3,D4,D6,D7,D9
`Chr6:1459359`	`AG`	`A`	1bp_deletion	frameshift_variant	131	A10,A13,A14,A15,A18,A19,A2,A22,A23,A24,A4,A5,A6,A7,B100,B104,B105,B106,B107,B11,B111,B112,B113,B115,B118,B120,B121,B122,B126,B128,B129,B13,B134,B135,B137,B138,B139,B14,B16,B17,B18,B20,B21,B25,B28,B29,B30,B31,B34,B36,B4,B40,B41,B45,B46,B47,B48,B53,B56,B57,B58,B61,B65,B67,B72,B73,B8,B80,B81,B82,B84,B88,B9,B93,B94,B95,B96,B97,B99,C10,C11,C14,C17,C21,C22,C24,C27,C3,C30,C33,C34,C35,C36,C38,C39,C40,C41,C43,C44,C46,C48,C5,C50,C52,C54,C56,C57,C58,C60,C61,C65,C69,C7,C70,C71,C72,C73,C74,C75,C8,C81,C82,C85,C9,D1,D11,D2,D4,D6,D7,D8
`Chr6:1459373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B48,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767407.1

365 aa

182

365

Aldose_epim

PF01263 Aldose_epim 6-129 aa PF01263 Aldose_epim 158-360 aa

XP_057767408.1

335 aa

168

335

Aldose_epim

PF01263 Aldose_epim 6-330 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767407.1`	Pfam	`PF01263`	Aldose_epim	Family	6	129	2.2e-92	310.4	Aldose 1-epimerase
`XP_057767407.1`	Pfam	`PF01263`	Aldose_epim	Family	158	360	2.2e-92	310.4	Aldose 1-epimerase
`XP_057767408.1`	Pfam	`PF01263`	Aldose_epim	Family	6	330	6.9e-98	328.5	Aldose 1-epimerase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911425.1
TAATGATTGAATAAACGTATATAAAATTGATTATATTGGCCCACCAACCTTCTACTTCACTGCCGAATCTGATCGAATATTACTTCTCCGACTCTTATTTTCTGTAGCCAAAACAACACAACCAAAAAAGAATAATTTTTCAGCATTCTAATGGCGGAGGCCAAGCTTTTTGAACTTAACAATGGCACTATGCGTGTAATCGTCTCCAATTACGGATGCACCATCACCTCAGTCTTTGTACCAGACCAAGATGGGAAATT...

XM_057911424.1
ATTGGCCCACCAACCTTCTACTTCACTGCCGAATCTGATCGAATATTACTTCTCCGACTCTTATTTTCTGTAGCCAAAACAACACAACCAAAAAAGAATAATTTTTCAGCATTCTAATGGCGGAGGCCAAGCTTTTTGAACTTAACAATGGCACTATGCGTGTAATCGTCTCCAATTACGGATGCACCATCACCTCAGTCTTTGTACCAGACCAAGATGGGAAATTGGCCGATGTCGTTCTTGGATTTGACACAATTGAG...

CDS

2 records

下载 CDS FASTA

LOC130987764
ATGGCGGAGGCCAAGCTTTTTGAACTTAACAATGGCACTATGCGTGTAATCGTCTCCAATTACGGATGCACCATCACCTCAGTCTTTGTACCAGACCAAGATGGGAAATTGGCCGATGTCGTTCTTGGATTTGACACAATTGAGCCATATCAGAAAGGTGCTGCTCCTTACTTTGGATGTATCGTGGGTCGGGTGGCGAATAGGATCAGAGATGGGAAGTTTACACTCAATGGAGTTGAGTACTCATTGCCTATTAACAA...

Protein

2 records

下载 Protein FASTA

XP_057767407.1
MAEAKLFELNNGTMRVIVSNYGCTITSVFVPDQDGKLADVVLGFDTIEPYQKGAAPYFGCIVGRVANRIRDGKFTLNGVEYSLPINKPPNSLHGGNKGFDKVIWEVAEYKQGDTPSITFKYRSPDGEEGNECIRVDCVKPLHLITHTYIFTYFIICNTGYPGDVSFSATYTLTSKTTMRLDMEGVPENKATPISLAQHTYWNLAGHESGTVLDHTIQIWADHITPVDQNTVPTGEIMPVKGTPFDFTTGNKIGTRINEVG...

XP_057767408.1
MAEAKLFELNNGTMRVIVSNYGCTITSVFVPDQDGKLADVVLGFDTIEPYQKGAAPYFGCIVGRVANRIRDGKFTLNGVEYSLPINKPPNSLHGGNKGFDKVIWEVAEYKQGDTPSITFKYRSPDGEEGYPGDVSFSATYTLTSKTTMRLDMEGVPENKATPISLAQHTYWNLAGHESGTVLDHTIQIWADHITPVDQNTVPTGEIMPVKGTPFDFTTGNKIGTRINEVGIGYDHNYVLDCGEQKSGLKHAAKLKDPASS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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