当前解析结果
SmilChr06G000219| 统一新 Gene ID | SmilChr06G000219 |
|---|---|
| 名称 | SmilChr06G000219 |
| 描述 | pentatricopeptide repeat-containing protein At5g48910-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1464235 - 1467093 / - |
| NCBI Gene ID | LOC130987766 |
|---|---|
| GeneID | 130987766 |
| locus_tag | - |
| NCBI Name | LOC130987766 |
| 原始查询 | SmilChr06G000219 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g48910-like |
| 产物 | pentatricopeptide repeat-containing protein At5g48910-like |
| Arabidopsis | AT5G48910 (LPA66)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834949] identity=36.7; qcov=0.991; evalue=1.89e-115; confidence=medium |
| Rice | Os05g0439300- identity=35.1; qcov=0.978; evalue=2.08e-111; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987766 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057767411.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057767411.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057767411.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057767411.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057767411.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1464332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B33 |
Chr6:1464469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,D11 |
Chr6:1464549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr6:1464556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B107,B131 |
Chr6:1464601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B136,B64,B81,C15 |
Chr6:1464702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C36,C37,D6 |
Chr6:1464794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,C13 |
Chr6:1464901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:1464928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:1464965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B115,B20,B73,C70 |
Chr6:1465313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B21,C23 |
Chr6:1465416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B17,B29,B63,C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767411.1PF13041
PPR_2 77-122 aa
PF01535
PPR 80-108 aa
PF12854
PPR_1 178-206 aa
PF13041
PPR_2 178-211 aa
PF01535
PPR 181-211 aa
PF01535
PPR 212-242 aa
PF01535
PPR 285-312 aa
PF01535
PPR 314-342 aa
PF01535
PPR 349-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767411.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 77 | 122 | 2.7e-42 | 143.4 | PPR repeat family |
XP_057767411.1 |
Pfam | PF01535 |
PPR | Repeat | 80 | 108 | 2.1e-43 | 144.3 | PPR repeat |
XP_057767411.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 178 | 206 | 1.4e-14 | 54.3 | PPR repeat |
XP_057767411.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 178 | 211 | 2.7e-42 | 143.4 | PPR repeat family |
XP_057767411.1 |
Pfam | PF01535 |
PPR | Repeat | 181 | 211 | 2.1e-43 | 144.3 | PPR repeat |
XP_057767411.1 |
Pfam | PF01535 |
PPR | Repeat | 212 | 242 | 2.1e-43 | 144.3 | PPR repeat |
XP_057767411.1 |
Pfam | PF01535 |
PPR | Repeat | 285 | 312 | 2.1e-43 | 144.3 | PPR repeat |
XP_057767411.1 |
Pfam | PF01535 |
PPR | Repeat | 314 | 342 | 2.1e-43 | 144.3 | PPR repeat |
XP_057767411.1 |
Pfam | PF01535 |
PPR | Repeat | 349 | 374 | 2.1e-43 | 144.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。