Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000220`

染色体: Chr06 坐标: 1468124-1472994 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000220`
名称	SmilChr06G000220
描述	linalool synthase Tps-5042L13, chloroplastic-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	1468124 - 1472994 / `-`

ID 对照

NCBI Gene ID	`LOC130987767`
GeneID	`130987767`
locus_tag	`-`
NCBI Name	`LOC130987767`
原始查询	`SmilChr06G000220`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	linalool synthase Tps-5042L13, chloroplastic-like
产物	linalool synthase Tps-5042L13%2C chloroplastic-like
Arabidopsis	`AT3G25820` (TPS-CIN) terpene synthase-like sequence-1,8-cineole [Source:NCBI gene (formerly Entrezgene);Acc:822175] identity=44.5; qcov=0.98; evalue=7.71e-144; confidence=medium
Rice	`Os02g0121700` (OsTPS3) - identity=31.3; qcov=0.947; evalue=1.06e-76; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:130987767

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057767412.1`
2	Cytoplasm	细胞质	0.40000	`XP_057767413.1`
3	Cytosol	细胞质基质	0.40000	`XP_057767413.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057767412.1`
5	Nucleus	细胞核	0.00000	`XP_057767412.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:1468581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr6:1468585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr6:1468590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr6:1468592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr6:1468650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C82
`Chr6:1468689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:1468857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:1468904`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	B100
`Chr6:1468904`	`AAG`	`A`	2bp_deletion	CDS_variant	1	B100
`Chr6:1468970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B64,B81,C15
`Chr6:1469009`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B64,B81,C15
`Chr6:1469030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767412.1

600 aa

300

600

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 66-233 aa PF03936 Terpene_synth_C 305-543 aa PF19086 Terpene_syn_C_2 346-543 aa

XP_057767413.1

509 aa

254

509

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 2-142 aa PF03936 Terpene_synth_C 214-452 aa PF19086 Terpene_syn_C_2 255-452 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767412.1`	Pfam	`PF01397`	Terpene_synth	Repeat	66	233	2.9e-45	155.0	Terpene synthase, N-terminal domain
`XP_057767412.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	305	543	9.3e-86	287.8	Terpene synthase family, metal binding domain
`XP_057767412.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	346	543	4.1e-59	200.4	Terpene synthase family 2, C-terminal metal binding
`XP_057767413.1`	Pfam	`PF01397`	Terpene_synth	Repeat	2	142	1.4e-42	146.2	Terpene synthase, N-terminal domain
`XP_057767413.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	214	452	6.4e-86	288.3	Terpene synthase family, metal binding domain
`XP_057767413.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	255	452	1.9e-59	201.5	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911429.1
ACAAACAAAGCAGTTCAAGTAAGCCAAAGAAGAAATACTAAGGTTGATCTCGATCAAAATGTCTCTCTCTATAATGCAAATGGCAATTCCTAACAAGCCAGCTTATAGTGATCATCTCCATAAATCACACAGCAGCAAGTCTTCAAAACTTTCTAGTAGCTGCAAAGTTAGTAATGCCCTGCGCTGCTCCTCTCAGCTAAATGTTGATCATCTCACAACTGAACGTCGATCTGGAAACTACAGTCCTTCCCGTTGGGATG...

XM_057911430.1
TTGGCGATCCATTTGCTTCATGATACTTACCATGGTTCTGACTCTTTGTGTGATGATTTGCATGAGGCTTTTGTTCATGCTCGTGAGACGGTGGTGTTGGAGTTTTTACATGTTCGTCGTGAGGCTAATAGAGCTACTCATGAACTTGCTAGACTAGCTCTGTCTTTTTCTGATGTAATGATTTGGAAGAAAAAAGGCATGCGAGAAGGGCCAGTGAGCTAATTATGCAAGTGAAGAAGATGTTGGAGAAAAAAGCGGAT...

CDS

2 records

下载 CDS FASTA

LOC130987767
ATGTCTCTCTCTATAATGCAAATGGCAATTCCTAACAAGCCAGCTTATAGTGATCATCTCCATAAATCACACAGCAGCAAGTCTTCAAAACTTTCTAGTAGCTGCAAAGTTAGTAATGCCCTGCGCTGCTCCTCTCAGCTAAATGTTGATCATCTCACAACTGAACGTCGATCTGGAAACTACAGTCCTTCCCGTTGGGATGTCGACTATATTCAATCACTTCAAAGTGATTATAAGGAAAAAAGGCATGCGAGAAGGGC...

LOC130987767
ATGCAAGTGAAGAAGATGTTGGAGAAAAAAGCGGATCCCACTCCACAACTGGAGTTGATTGATGAGTTGCAGAGGCTGGCTCTTTCTGAACATTTCCACGATGAATTCAAAGAAATCTTAAGCTCTGTATATTTGGACAATAAATATTACAAGAATGGCGAGATCATCGAGCAAGAGGATGGAGATTTGTACTCTACAGCTCTTGCATTCAGACTCCTCAGACAATATGGCTTTCAAGTTGCTCAAGAGGTGTTTGAGTG...

Protein

2 records

下载 Protein FASTA

XP_057767412.1
MSLSIMQMAIPNKPAYSDHLHKSHSSKSSKLSSSCKVSNALRCSSQLNVDHLTTERRSGNYSPSRWDVDYIQSLQSDYKEKRHARRASELIMQVKKMLEKKADPTPQLELIDELQRLALSEHFHDEFKEILSSVYLDNKYYKNGEIIEQEDGDLYSTALAFRLLRQYGFQVAQEVFECFKNEEGEFKASLRDDTRGLLQLYEASFLSTEGENTLDLAREFATKILQEKLVNDEIDDSNLITWTRHSLEIPIHWSIERVNT...

XP_057767413.1
MQVKKMLEKKADPTPQLELIDELQRLALSEHFHDEFKEILSSVYLDNKYYKNGEIIEQEDGDLYSTALAFRLLRQYGFQVAQEVFECFKNEEGEFKASLRDDTRGLLQLYEASFLSTEGENTLDLAREFATKILQEKLVNDEIDDSNLITWTRHSLEIPIHWSIERVNTSVWIDAYKRRDDMNPIVLELAILDSNIVQALYQEELKQDLQWWRNTSLAEKLPFVRDRLVESYFWGVGVVQPRQHGTARMVVDRSIAFITV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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