当前解析结果
SmilChr06G000230| 统一新 Gene ID | SmilChr06G000230 |
|---|---|
| 名称 | SmilChr06G000230 |
| 描述 | protein NRT1/ PTR FAMILY 5.5-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1546511 - 1548697 / + |
| NCBI Gene ID | LOC130987805 |
|---|---|
| GeneID | 130987805 |
| locus_tag | - |
| NCBI Name | LOC130987805 |
| 原始查询 | SmilChr06G000230 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NRT1/ PTR FAMILY 5.5-like |
| 产物 | protein NRT1/ PTR FAMILY 5.5-like |
| Arabidopsis | AT2G38100 (AT2G38100)proton-dependent oligopeptide transport (POT) family protein [Source:NCBI gene (formerly Entrezgene);Acc:818388] identity=34.3; qcov=0.553; evalue=6.62e-35; confidence=low |
| Rice | Os01g0871500- identity=25.3; qcov=1.08; evalue=5.55e-30; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987805 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057767470.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057767470.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057767470.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767470.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767470.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1546834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,A25,B74,B84 |
Chr6:1546906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,B91 |
Chr6:1546907 |
TCA |
T |
2bp_deletion | frameshift_variant | 2 | B70,C41 |
Chr6:1546907 |
TCA |
T |
2bp_deletion | CDS_variant | 2 | B70,C41 |
Chr6:1546913 |
C |
CCT |
2bp_insertion | frameshift_variant | 1 | B70 |
Chr6:1546913 |
C |
CCT |
2bp_insertion | CDS_variant | 1 | B70 |
Chr6:1546921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr6:1547141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr6:1547176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr6:1547218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr6:1547359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:1547401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。