当前解析结果
SmilChr06G000232| 统一新 Gene ID | SmilChr06G000232 |
|---|---|
| 名称 | SmilChr06G000232 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1554818 - 1559887 / + |
| NCBI Gene ID | LOC130987771 |
|---|---|
| GeneID | 130987771 |
| locus_tag | - |
| NCBI Name | LOC130987771 |
| 原始查询 | SmilChr06G000232 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.3; qcov=0.463; evalue=1.91e-71; confidence=low |
| Rice | Os11g0258500- identity=29.8; qcov=0.445; evalue=1.86e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987771 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057767419.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057767419.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767419.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767419.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767419.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1554940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr6:1554953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,D11 |
Chr6:1554956 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | A5,B115,B20,C53,C70 |
Chr6:1554956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B115,B20,C53,C70 |
Chr6:1555199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr6:1555238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B108,B53,C46 |
Chr6:1555309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr6:1555547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C4 |
Chr6:1555581 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:1555768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B139,B22,B60,C52 |
Chr6:1555959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C13 |
Chr6:1556033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,C35,C84,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767419.1PF00931
NB-ARC 179-346 aa
PF23559
WHD_DRP 431-502 aa
PF23598
LRR_14 569-745 aa
PF00931
NB-ARC 883-1051 aa
PF23559
WHD_DRP 1139-1209 aa
PF23598
LRR_14 1288-1585 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767419.1 |
Pfam | PF00931 |
NB-ARC | Domain | 179 | 346 | 4.7e-82 | 274.5 | NB-ARC domain |
XP_057767419.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 431 | 502 | 1.6e-40 | 137.7 | Disease resistance protein Winged helix domain |
XP_057767419.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 569 | 745 | 3.7e-31 | 108.9 | Leucine-rich repeat region |
XP_057767419.1 |
Pfam | PF00931 |
NB-ARC | Domain | 883 | 1051 | 4.7e-82 | 274.5 | NB-ARC domain |
XP_057767419.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 1139 | 1209 | 1.6e-40 | 137.7 | Disease resistance protein Winged helix domain |
XP_057767419.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 1288 | 1585 | 3.7e-31 | 108.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。