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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000257

染色体: Chr06 坐标: 1695648-1699202 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000257
名称SmilChr06G000257
描述pentatricopeptide repeat-containing protein At3g06920-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向1695648 - 1699202 / +

ID 对照

NCBI Gene IDLOC130987780
GeneID130987780
locus_tag-
NCBI NameLOC130987780
原始查询SmilChr06G000257

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g06920-like
产物pentatricopeptide repeat-containing protein At3g06920-like
ArabidopsisAT3G06920 (AT3G06920)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819877]
identity=72.9; qcov=0.992; evalue=0; confidence=high
RiceOs07g0249100 (P0021G06.106)
-
identity=62.9; qcov=0.989; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130987780

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057767436.1
2 Chloroplast 叶绿体 0.20000 XP_057767436.1
3 Nucleus 细胞核 0.00000 XP_057767436.1
4 Chromosome 染色体 0.00000 XP_057767436.1
5 Centromere 着丝粒 0.00000 XP_057767436.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767436.1
848 aa
N
1
424
848
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR
PPR_long
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
C
PF17177 PPR_long 115-264 aa PF13812 PPR_3 167-228 aa PF12854 PPR_1 176-208 aa PF01535 PPR 184-211 aa PF13041 PPR_2 215-263 aa PF01535 PPR 217-247 aa PF12854 PPR_1 246-278 aa PF01535 PPR 252-278 aa PF17177 PPR_long 263-427 aa PF01535 PPR 288-311 aa PF12854 PPR_1 315-348 aa PF13812 PPR_3 315-364 aa PF13041 PPR_2 319-367 aa PF23276 TPR_24 322-416 aa PF01535 PPR 323-349 aa PF12854 PPR_1 352-382 aa PF13812 PPR_3 352-398 aa PF13041 PPR_2 353-402 aa PF01535 PPR 356-386 aa PF13812 PPR_3 377-434 aa PF12854 PPR_1 385-416 aa PF13041 PPR_2 388-436 aa PF01535 PPR 392-419 aa PF12854 PPR_1 421-451 aa PF01535 PPR 426-454 aa PF13041 PPR_2 430-468 aa PF13041 PPR_2 458-494 aa PF01535 PPR 462-490 aa PF01535 PPR 531-560 aa PF23276 TPR_24 549-628 aa PF13812 PPR_3 551-606 aa PF12854 PPR_1 559-591 aa PF13041 PPR_2 563-611 aa PF01535 PPR 566-594 aa PF12854 PPR_1 593-624 aa PF13041 PPR_2 599-646 aa PF01535 PPR 600-630 aa PF17177 PPR_long 613-693 aa PF13812 PPR_3 621-681 aa PF23276 TPR_24 626-729 aa PF12854 PPR_1 629-660 aa PF13041 PPR_2 633-679 aa PF01535 PPR 635-664 aa PF13041 PPR_2 667-716 aa PF01535 PPR 671-700 aa PF12854 PPR_1 700-731 aa PF01535 PPR 705-735 aa PF13041 PPR_2 710-751 aa PF13812 PPR_3 728-781 aa PF12854 PPR_1 734-763 aa PF01535 PPR 740-769 aa PF13041 PPR_2 740-784 aa PF13041 PPR_2 772-821 aa PF01535 PPR 776-805 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057767436.1 Pfam PF17177 PPR_long Repeat 115 264 1.8e-45 155.6 Pentacotripeptide-repeat region of PRORP
XP_057767436.1 Pfam PF13812 PPR_3 Repeat 167 228 2.1e-71 236.6 Pentatricopeptide repeat domain
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 176 208 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF01535 PPR Repeat 184 211 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 215 263 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 217 247 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 246 278 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF01535 PPR Repeat 252 278 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF17177 PPR_long Repeat 263 427 1.8e-45 155.6 Pentacotripeptide-repeat region of PRORP
XP_057767436.1 Pfam PF01535 PPR Repeat 288 311 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 315 348 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF13812 PPR_3 Repeat 315 364 2.1e-71 236.6 Pentatricopeptide repeat domain
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 319 367 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF23276 TPR_24 Repeat 322 416 6.9e-45 152.9 Pentatricopeptide repeat-containing protein
XP_057767436.1 Pfam PF01535 PPR Repeat 323 349 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 352 382 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF13812 PPR_3 Repeat 352 398 2.1e-71 236.6 Pentatricopeptide repeat domain
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 353 402 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 356 386 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF13812 PPR_3 Repeat 377 434 2.1e-71 236.6 Pentatricopeptide repeat domain
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 385 416 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 388 436 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 392 419 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 421 451 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF01535 PPR Repeat 426 454 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 430 468 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 458 494 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 462 490 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF01535 PPR Repeat 531 560 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF23276 TPR_24 Repeat 549 628 6.9e-45 152.9 Pentatricopeptide repeat-containing protein
XP_057767436.1 Pfam PF13812 PPR_3 Repeat 551 606 2.1e-71 236.6 Pentatricopeptide repeat domain
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 559 591 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 563 611 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 566 594 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 593 624 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 599 646 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 600 630 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF17177 PPR_long Repeat 613 693 1.8e-45 155.6 Pentacotripeptide-repeat region of PRORP
XP_057767436.1 Pfam PF13812 PPR_3 Repeat 621 681 2.1e-71 236.6 Pentatricopeptide repeat domain
XP_057767436.1 Pfam PF23276 TPR_24 Repeat 626 729 6.9e-45 152.9 Pentatricopeptide repeat-containing protein
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 629 660 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 633 679 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 635 664 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 667 716 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 671 700 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 700 731 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF01535 PPR Repeat 705 735 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 710 751 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF13812 PPR_3 Repeat 728 781 2.1e-71 236.6 Pentatricopeptide repeat domain
XP_057767436.1 Pfam PF12854 PPR_1 Repeat 734 763 2.6e-145 472.5 PPR repeat
XP_057767436.1 Pfam PF01535 PPR Repeat 740 769 9.1e-130 415.0 PPR repeat
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 740 784 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF13041 PPR_2 Repeat 772 821 4.6e-170 552.4 PPR repeat family
XP_057767436.1 Pfam PF01535 PPR Repeat 776 805 9.1e-130 415.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009089850.1
TCTTTGAATGATGGGAGGTTTGGTGTGGATGTTAATGAAGGAGCCAACAATGAGGGGAAGTGGAGAACTCCTCATAGTAATGGGGGAGATGCTCATATGAGGAAACACGAACTTTTGAGGAGAGGGATTGAGAATGTGTGTCAGATTTTGGAAAGTGGCCCGTGGGGACCTTCATTGGAGAAAGCTCTCTCTTTGTGTGATGATAAACCTGAGGCAGACCTGGTTATTGGAGTGTTGAGGAGGCTGAAGGATATCAATCT...
XM_057911453.1
TCTTTGAATGATGGGAGGTTTGGTGTGGATGTTAATGAAGGAGCCAACAATGAGGGGAAGTGGAGAACTCCTCATAGTAATGGGGGAGATGCTCATATGAGGAAACACGAACTTTTGAGGAGAGGGATTGAGAATGTGTGTCAGATTTTGGAAAGTGGCCCGTGGGGACCTTCATTGGAGAAAGCTCTCTCTTTGTGTGATGATAAACCTGAGGCAGACCTGGTTATTGGAGTGTTGAGGAGGCTGAAGGATATCAATCT...

CDS

1 records

下载 CDS FASTA
LOC130987780
ATGAGGAAACACGAACTTTTGAGGAGAGGGATTGAGAATGTGTGTCAGATTTTGGAAAGTGGCCCGTGGGGACCTTCATTGGAGAAAGCTCTCTCTTTGTGTGATGATAAACCTGAGGCAGACCTGGTTATTGGAGTGTTGAGGAGGCTGAAGGATATCAATCTAGCAATTAATTACTTTAGATGGGTGGAGAGGGCAACAAACCAAGTGAATCTGCCAGAAACATACCACTCGCTTCTGATATTGATGGCAAGGTGTAG...

Protein

1 records

下载 Protein FASTA
XP_057767436.1
MRKHELLRRGIENVCQILESGPWGPSLEKALSLCDDKPEADLVIGVLRRLKDINLAINYFRWVERATNQVNLPETYHSLLILMARCRKFDRIGHVLEEMSLAGFGLSFETSMDLVSSCVKAQRLWEAYDLIQTMRNFKFRPAFSAYTTLIGALAAVHKPEHPNLMLSLFHQMQELGYEVSVHLFTTLIRVFARDGQVDAALSLLDEMKSNSFQADIVLYNVCIDCFGKAGKVDMAWKFFHEIKAHGLIPDDVSFTSMIGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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