当前解析结果
SmilChr06G000270| 统一新 Gene ID | SmilChr06G000270 |
|---|---|
| 名称 | SmilChr06G000270 |
| 描述 | adenylate kinase 4 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1825123 - 1830085 / - |
| NCBI Gene ID | LOC130987811 |
|---|---|
| GeneID | 130987811 |
| locus_tag | - |
| NCBI Name | LOC130987811 |
| 原始查询 | SmilChr06G000270 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | adenylate kinase 4 |
| 产物 | adenylate kinase 4 |
| Arabidopsis | AT5G63400 (ADK1)adenylate kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:836459] identity=81.7; qcov=0.992; evalue=1.07e-152; confidence=high |
| Rice | Os11g0312400 (ADK-B)- identity=87.7; qcov=1; evalue=4.78e-162; confidence=high |
| GO | GO:0004017 (AMP kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0006139 (nucleobase-containing compound metabolic process) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00406 (ADK); PF05191 (ADK_lid); PF13207 (AAA_17) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987811 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057767477.1 |
| 2 | Mitochondrion intermembrane space | Mitochondrion intermembrane space | 0.80000 | XP_057767477.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057767477.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057767477.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057767477.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1825323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B93 |
Chr6:1825342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B30,B38,B39,C82 |
Chr6:1825343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr6:1827817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,C27,C55 |
Chr6:1828087 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C39 |
Chr6:1828167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr6:1828212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B120 |
Chr6:1828533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:1828544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr6:1829833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr6:1829839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767477.1PF00406
ADK 35-220 aa
PF13207
AAA_17 36-156 aa
PF05191
ADK_lid 157-192 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767477.1 |
Pfam | PF00406 |
ADK | Domain | 35 | 220 | 5.2e-59 | 199.4 | Adenylate kinase |
XP_057767477.1 |
Pfam | PF13207 |
AAA_17 | Domain | 36 | 156 | 6.1e-25 | 88.8 | AAA domain |
XP_057767477.1 |
Pfam | PF05191 |
ADK_lid | Domain | 157 | 192 | 1.6e-17 | 63.8 | Adenylate kinase, active site lid |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。