当前解析结果
SmilChr06G000287| 统一新 Gene ID | SmilChr06G000287 |
|---|---|
| 名称 | SmilChr06G000287 |
| 描述 | non-specific phospholipase C6-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1966480 - 1969467 / - |
| NCBI Gene ID | LOC130987802 |
|---|---|
| GeneID | 130987802 |
| locus_tag | - |
| NCBI Name | LOC130987802 |
| 原始查询 | SmilChr06G000287 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | non-specific phospholipase C6-like |
| 产物 | non-specific phospholipase C6-like |
| Arabidopsis | AT3G48610 (NPC6)non-specific phospholipase C6 [Source:NCBI gene (formerly Entrezgene);Acc:824021] identity=71.5; qcov=0.99; evalue=0; confidence=high |
| Rice | Os01g0955000 (OsNPC2)- identity=59.6; qcov=0.964; evalue=0; confidence=high |
| GO | GO:0009395 (phospholipid catabolic process); GO:0016788 (hydrolase activity, acting on ester bonds) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04185 (Phosphoesterase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987802 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057767468.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057767468.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057767468.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057767468.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057767468.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1966765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B21,B6,C67 |
Chr6:1966781 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B131,B137 |
Chr6:1966781 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B131,B137 |
Chr6:1966785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr6:1966810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B16,D4 |
Chr6:1966858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:1966861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr6:1966957 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | C14 |
Chr6:1966957 |
A |
AG |
1bp_insertion | CDS_variant | 1 | C14 |
Chr6:1966972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B12,C2 |
Chr6:1967069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr6:1967191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767468.1PF04185
Phosphoesterase 27-380 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767468.1 |
Pfam | PF04185 |
Phosphoesterase | Family | 27 | 380 | 6.7e-105 | 351.9 | Phosphoesterase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。