Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000298`

染色体: Chr06 坐标: 2121637-2126057 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000298`
名称	SmilChr06G000298
描述	phosphopantothenate--cysteine ligase 2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	2121637 - 2126057 / `-`

ID 对照

NCBI Gene ID	`LOC130987852`
GeneID	`130987852`
locus_tag	`-`
NCBI Name	`LOC130987852`
原始查询	`SmilChr06G000298`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphopantothenate--cysteine ligase 2-like
产物	phosphopantothenate--cysteine ligase 2-like
Arabidopsis	`AT5G02080` (AT5G02080) phosphopantothenate-cysteine ligase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831921] identity=61.5; qcov=0.938; evalue=5.37e-127; confidence=high
Rice	`Os08g0176100` - identity=57.9; qcov=0.931; evalue=3.69e-123; confidence=high
GO	GO:0004632 (phosphopantothenate--cysteine ligase activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0015937 (coenzyme A biosynthetic process)
KEGG	smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF04127 (DFP)
InterPro	-
eggNOG	-
NR	GeneID:130987852

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057767538.1`
2	Cytosol	细胞质基质	1.00000	`XP_057767538.1`
3	Nucleus	细胞核	0.60000	`XP_057767538.1`
4	Nucleoplasm	核质	0.20000	`XP_057767538.1`
5	Chromosome	染色体	0.00000	`XP_057767538.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:2121859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr6:2121884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B78,C23,D7
`Chr6:2121995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr6:2122207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B130,B54,C20
`Chr6:2122498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:2122546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B102,B35,C10,C84
`Chr6:2122551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B20,B99
`Chr6:2122565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B102,B35,C10,C84
`Chr6:2122929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B115,B35,C45
`Chr6:2122949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr6:2122968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,C5,C59
`Chr6:2122970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767538.1

321 aa

160

321

DFP

PF04127 DFP 53-100 aa PF04127 DFP 171-293 aa

XP_057767539.1

321 aa

160

321

DFP

PF04127 DFP 53-100 aa PF04127 DFP 171-293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767538.1`	Pfam	`PF04127`	DFP	Domain	53	100	3.5e-18	66.8	DNA/pantothenate metabolism flavoprotein C-terminal domain
`XP_057767538.1`	Pfam	`PF04127`	DFP	Domain	171	293	3.5e-18	66.8	DNA/pantothenate metabolism flavoprotein C-terminal domain
`XP_057767539.1`	Pfam	`PF04127`	DFP	Domain	53	100	3.5e-18	66.8	DNA/pantothenate metabolism flavoprotein C-terminal domain
`XP_057767539.1`	Pfam	`PF04127`	DFP	Domain	171	293	3.5e-18	66.8	DNA/pantothenate metabolism flavoprotein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911555.1
ATTGGGCTTATATAAGCGGCAGCCGGCAGGGTAGGGAAACTATGCTTCTAACAGATGGCTAATTTAATTTTATTTGCCAATTAAGTTAATATTTTTCCAAAAAGTTGCTAGTATGCTACACAATTTCCGTGATGGCCTCCATTTTCTCTCCCACCCTAAAACAAGTGGTTGAGCTGCTTATTTACTCCTCTTTTGAATTTTTCAAGTCAATCTGCAGCTGCCCATCTCCTTCTTTTCAGCTCTAATTTCCAATAATTAGA...

XM_057911556.1
TATATAAGCGGCAGCCGGCAGGGTAGGGAAACTATGCTTCTAACAGATGGCTAATTTAATTTTATTTGCCAATTAAGTTAATATTTTTCCAAAAAGTTGCTAGTATGCTACACAATTTCCGTGATGGCCTCCATTTTCTCTCCCACCCTAAAACAAGTGGTTGAGCTGCTTATTTACTCCTCTTTTGAATTTTTCAAGTCAATCTGCAGCTGCCCATCTCCTTCTTTTCAGCTCTAATTTCCAATAATTAGATTACCTAC...

CDS

2 records

下载 CDS FASTA

LOC130987852
ATGAATGCTTCAAACGGTTTGGGGGATTTTGAAGAAACATCTAATGTTGGTATCAAGTCTTTCTTCGACTCATCCCCTCCTCTAAAGGATGCTGCAGAAATAAAAAAAAAAACTGAAGAATTCATGCAAAAGAATTCATTTTCAGAAAAAACTAGGAGGATAGTGTTGGTGACCTCCGGAGGAACAACTGTTCCTTTGGAGCAACGATGTGTTCGTTATATTGATAATTTCAGCTCAGGCCATCGAGGAGCGACTTCTGC...

Protein

2 records

下载 Protein FASTA

XP_057767538.1
MNASNGLGDFEETSNVGIKSFFDSSPPLKDAAEIKKKTEEFMQKNSFSEKTRRIVLVTSGGTTVPLEQRCVRYIDNFSSGHRGATSAEYFLRAGYAVVFLYREGTYQPFCRSLPNNPLLECLEVTKESNITVRPPYDQTVKKAISNSHVAISCGTLLKLSFTTIFEYLQNLQLIASSMSSLGSRALFYLAAAVSDFYVPWESMAVHKIQSSSGPLDMRLAQVPKMLLVLRRDWAPKAFCISFKLETDKEILLKKAGAALE...

XP_057767539.1
MNASNGLGDFEETSNVGIKSFFDSSPPLKDAAEIKKKTEEFMQKNSFSEKTRRIVLVTSGGTTVPLEQRCVRYIDNFSSGHRGATSAEYFLRAGYAVVFLYREGTYQPFCRSLPNNPLLECLEVTKESNITVRPPYDQTVKKAISNSHVAISCGTLLKLSFTTIFEYLQNLQLIASSMSSLGSRALFYLAAAVSDFYVPWESMAVHKIQSSSGPLDMRLAQVPKMLLVLRRDWAPKAFCISFKLETDKEILLKKAGAALE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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