当前解析结果
SmilChr06G000308| 统一新 Gene ID | SmilChr06G000308 |
|---|---|
| 名称 | SmilChr06G000308 |
| 描述 | uncharacterized SmilChr06G000308 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2225031 - 2228206 / - |
| NCBI Gene ID | LOC130987845 |
|---|---|
| GeneID | 130987845 |
| locus_tag | - |
| NCBI Name | LOC130987845 |
| 原始查询 | SmilChr06G000308 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:827919]; symbol=AT4G02540; hit=AT4G02540; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:827919]; symbol=AT4G02540; hit=AT4G02540; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G02540 (AT4G02540)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:827919] identity=26.2; qcov=0.854; evalue=1.3e-35; confidence=low |
| Rice | Os09g0492800- identity=30.5; qcov=0.18; evalue=2.56e-09; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057767526.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057767526.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767526.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767526.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2225252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr6:2225295 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B65,C54 |
Chr6:2225295 |
C |
CA |
1bp_insertion | CDS_variant | 2 | B65,C54 |
Chr6:2225310 |
GCC |
G |
2bp_deletion | frameshift_variant | 2 | B65,C54 |
Chr6:2225310 |
GCC |
G |
2bp_deletion | CDS_variant | 2 | B65,C54 |
Chr6:2225314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C54 |
Chr6:2225324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,C54,C9 |
Chr6:2225364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr6:2225472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B26,C48 |
Chr6:2225495 |
TTC |
T |
2bp_deletion | frameshift_variant | 29 | A16,A23,B106,B108,B115,B119,B137,B16,B23,B3,B37,B41,B45,B52,B62,B63,B95,B97,C23,C3,C46,C48,C5,C68,C74,C79,C87,D2,D9 |
Chr6:2225499 |
C |
CTT |
2bp_insertion | frameshift_variant | 13 | B115,B137,B41,B52,B63,B95,C46,C48,C5,C74,C79,C87,D9 |
Chr6:2225513 |
GGT |
G |
2bp_deletion | frameshift_variant | 11 | B115,B137,B63,B95,C46,C48,C5,C6,C79,C87,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767526.1PF03107
C1_2 81-130 aa
PF03107
C1_2 148-191 aa
PF03107
C1_2 204-253 aa
PF03107
C1_2 420-462 aa
PF03107
C1_2 531-579 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767526.1 |
Pfam | PF03107 |
C1_2 | Domain | 81 | 130 | 1.2e-50 | 170.2 | C1 domain |
XP_057767526.1 |
Pfam | PF03107 |
C1_2 | Domain | 148 | 191 | 1.2e-50 | 170.2 | C1 domain |
XP_057767526.1 |
Pfam | PF03107 |
C1_2 | Domain | 204 | 253 | 1.2e-50 | 170.2 | C1 domain |
XP_057767526.1 |
Pfam | PF03107 |
C1_2 | Domain | 420 | 462 | 1.2e-50 | 170.2 | C1 domain |
XP_057767526.1 |
Pfam | PF03107 |
C1_2 | Domain | 531 | 579 | 1.2e-50 | 170.2 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。