当前解析结果
SmilChr06G000321| 统一新 Gene ID | SmilChr06G000321 |
|---|---|
| 名称 | SmilChr06G000321 |
| 描述 | uncharacterized SmilChr06G000321 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2345224 - 2348210 / + |
| NCBI Gene ID | LOC130987843 |
|---|---|
| GeneID | 130987843 |
| locus_tag | - |
| NCBI Name | LOC130987843 |
| 原始查询 | SmilChr06G000321 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=medium |
| 产物 | DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G21700 (AT4G21700)DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257] identity=38.5; qcov=1.04; evalue=0; confidence=medium |
| Rice | Os05g0557500- identity=46.6; qcov=0.469; evalue=9.84e-120; confidence=medium |
| GO | GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF11145 (DUF2921); PF25333 (DUF2921_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987843 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057767523.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057767523.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767523.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767523.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767523.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2345413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr6:2345429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr6:2345562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr6:2345565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,C72 |
Chr6:2345709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:2345767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B94 |
Chr6:2345841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B34,D1,D8 |
Chr6:2346207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,C64,D3 |
Chr6:2346375 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B123 |
Chr6:2346610 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B34,D1,D8 |
Chr6:2346621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B105,B131 |
Chr6:2346705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B34,D1,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767523.1PF25333
DUF2921_N 92-222 aa
PF25333
DUF2921_N 308-417 aa
PF25333
DUF2921_N 447-619 aa
PF11145
DUF2921 630-900 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767523.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 92 | 222 | 3.6e-68 | 230.6 | DUF2921 lipocalin-like domain |
XP_057767523.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 308 | 417 | 3.6e-68 | 230.6 | DUF2921 lipocalin-like domain |
XP_057767523.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 447 | 619 | 3.6e-68 | 230.6 | DUF2921 lipocalin-like domain |
XP_057767523.1 |
Pfam | PF11145 |
DUF2921 | Repeat | 630 | 900 | 1.1e-70 | 238.6 | Transmembrane E3 ligase/DUF2921 transmembrane domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。