当前解析结果
SmilChr06G000340| 统一新 Gene ID | SmilChr06G000340 |
|---|---|
| 名称 | SmilChr06G000340 |
| 描述 | heavy metal-associated isoprenylated plant protein 7-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2554031 - 2554510 / + |
| NCBI Gene ID | LOC130990049 |
|---|---|
| GeneID | 130990049 |
| locus_tag | - |
| NCBI Name | LOC130990049 |
| 原始查询 | SmilChr06G000340 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 7-like |
| 产物 | heavy metal-associated isoprenylated plant protein 7-like |
| Arabidopsis | AT5G50740 (AT5G50740)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835146] identity=84; qcov=0.357; evalue=1.21e-20; confidence=low |
| Rice | Os04g0390100- identity=61.4; qcov=0.314; evalue=8.69e-09; confidence=low |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990049 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057770230.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057770230.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770230.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770230.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770230.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2554039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,C20,C77 |
Chr6:2554073 |
C |
CA |
1bp_insertion | frameshift_variant | 54 | A16,A3,B103,B104,B107,B110,B118,B119,B12,B124,B125,B127,B133,B134,B136,B2,B26,B27,B29,B3,B32,B51,B53,B55,B59,B6,B66,B88,B92,B97,B98,C1,C19,C22,C27,C4,C41,C42,C47,C49,C52,C53,C57,C59,C6,C65,C72,C74,C81,C83,C85,C9,D1,D7 |
Chr6:2554150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C76 |
Chr6:2554159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,C64 |
Chr6:2554185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr6:2554242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr6:2554342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C54 |
Chr6:2554348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B3,C45,C78 |
Chr6:2554351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B2,B47,C63 |
Chr6:2554353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B2,B47,C2,C63 |
Chr6:2554394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr6:2554395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。